RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 PRO3102Q9H379 93 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 PFASO15067 1338 aa11.56□□□□□ -0.56
CIITA-207ENST00000571545 SMIM22K7EJ46 135 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 COBLO75128 1261 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 PRDM1O75626 825 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 PCP11498 1178 aaKnown RBP11.55□□□□□ -0.56
CIITA-207ENST00000571545 STAT2P52630 851 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 SNRNP48Q6IEG0 339 aaKnown RBP11.55□□□□□ -0.56
CIITA-207ENST00000571545 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.55□□□□□ -0.56
CIITA-207ENST00000571545 FAM160B2Q86V87 743 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 STK11IPQ8N1F8 1099 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 REPS2Q8NFH8 660 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 CHURC1Q8WUH1 139 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 GMCL1Q96IK5 515 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 YTHDC1Q96MU7 727 aaKnown RBP11.55□□□□□ -0.56
CIITA-207ENST00000571545 FBXO28Q9NVF7 368 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 PRKAG2Q9UGJ0 569 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 ANAPC4Q9UJX5 808 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 CNPY2Q9Y2B0 182 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 SYNGAP1Q96PV0 1343 aa11.55□□□□□ -0.56
CIITA-207ENST00000571545 HIP1O00291 1037 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 RARBP10826 455 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 BMP3P12645 472 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 SLC1A4P43007 532 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 TFAP4Q01664 338 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 ALX1Q15699 326 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 MCMDC2Q4G0Z9 681 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 SMC5Q8IY18 1101 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 CHST13Q8NET6 341 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 DDX11Q96FC9 970 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 SEC62Q99442 399 aaKnown RBP11.54□□□□□ -0.56
CIITA-207ENST00000571545 TINF2Q9BSI4 451 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 SLC38A10Q9HBR0 1119 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 ISY1Q9ULR0 285 aaKnown RBP11.54□□□□□ -0.56
CIITA-207ENST00000571545 STX8Q9UNK0 236 aa11.54□□□□□ -0.56
CIITA-207ENST00000571545 TRIM6-TRIM34B2RNG4 842 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 ORC4O43929 436 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 PLA2G6O60733 806 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 AKR1A1P14550 325 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 IKQ13123 557 aaPredicted RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 ZNF792Q3KQV3 632 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 TKFCQ3LXA3 575 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 SLFN13Q68D06 897 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 ZNF467Q7Z7K2 595 aaPredicted RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 RNF180Q86T96 592 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 LRRC47Q8N1G4 583 aaKnown RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 KIFC2Q96AC6 838 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 NUP88Q99567 741 aaPredicted RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 GDF15Q99988 308 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 SENP6Q9GZR1 1112 aaPredicted RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 PNMA2Q9UL42 364 aa11.53□□□□□ -0.56
CIITA-207ENST00000571545 ZMYND8Q9ULU4 1186 aaPredicted RBP11.53□□□□□ -0.56
CIITA-207ENST00000571545 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.53□□□□□ -0.56
CIITA-207ENST00000571545 LRRC26Q2I0M4 334 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 RCSD1Q6JBY9 416 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 GPR153Q6NV75 609 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 ANKRD35Q8N283 1001 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 TRPV1Q8NER1 839 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 LBHD1Q9BQE6 289 aaPredicted RBP11.52□□□□□ -0.57
CIITA-207ENST00000571545 LNPKQ9C0E8 428 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 OSBPL3Q9H4L5 887 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 RNF41Q9H4P4 317 aaPredicted RBP11.52□□□□□ -0.57
CIITA-207ENST00000571545 XPNPEP3Q9NQH7 507 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 SSUH2Q9Y2M2 353 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 CCDC171Q6TFL3 1326 aa11.52□□□□□ -0.57
CIITA-207ENST00000571545 TMEM232C9JQI7 657 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 PITPNM1O00562 1244 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 RANBP6O60518 1105 aaKnown RBP11.51□□□□□ -0.57
CIITA-207ENST00000571545 PGK2P07205 417 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 MAGEA10P43363 369 aaPredicted RBP11.51□□□□□ -0.57
CIITA-207ENST00000571545 FAM47AQ5JRC9 791 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 C1orf53Q5VUE5 145 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 MAMDC4Q6UXC1 1216 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 CCDC129Q6ZRS4 1044 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 CHD1LQ86WJ1 897 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 TDHQ8IZJ6 230 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 CPXCR1Q8N123 301 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 DCAF4Q8WV16 495 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 STAG1Q8WVM7 1258 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 RILPL2Q969X0 211 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 UBE2OQ9C0C9 1292 aaKnown RBP11.51□□□□□ -0.57
CIITA-207ENST00000571545 ACAD9Q9H845 621 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 TOMM22Q9NS69 142 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 LAMA4Q16363 1823 aa11.51□□□□□ -0.57
CIITA-207ENST00000571545 DNAJC25-GNG10A0A024R161 153 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 A0A0D9SFI3 127 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 FOXP2O15409 715 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 FGRP09769 529 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 HSPD1P10809 573 aaKnown RBP11.5□□□□□ -0.57
CIITA-207ENST00000571545 SYN1P17600 705 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 NUCB1Q02818 461 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 CTDSPL2Q05D32 466 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 LRRC41Q15345 812 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 CCDC178Q5BJE1 867 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 GJC2Q5T442 439 aaPredicted RBP11.5□□□□□ -0.57
CIITA-207ENST00000571545 TSEN34Q9BSV6 310 aaKnown RBP11.5□□□□□ -0.57
CIITA-207ENST00000571545 ABHD16BQ9H3Z7 469 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 SPC25Q9HBM1 224 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 RAVER2Q9HCJ3 691 aaKnown RBP11.5□□□□□ -0.57
CIITA-207ENST00000571545 DIAPH3Q9NSV4 1193 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms