RNA–Protein interactions for RNA: ENST00000568238.1

TSC2-220, Transcript of TSC complex subunit 2, humanhuman

TSL 3

Gene TSC2, Length 422 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSC2-220ENST00000568238 FAM47AQ5JRC9 791 aa15.28■□□□□ 0.04
TSC2-220ENST00000568238 PRPF38AQ8NAV1 312 aaKnown RBP15.28■□□□□ 0.04
TSC2-220ENST00000568238 GMCL1P1Q8NEA9 526 aa15.28■□□□□ 0.04
TSC2-220ENST00000568238 HELLSQ9NRZ9 838 aa15.28■□□□□ 0.04
TSC2-220ENST00000568238 PCDH10Q9P2E7 1040 aa15.28■□□□□ 0.04
TSC2-220ENST00000568238 LAMA4Q16363 1823 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 SEPT4O43236 478 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 PGK2P07205 417 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 TFAP4Q01664 338 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 PPP4R3BQ5MIZ7 849 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 VPS53Q5VIR6 699 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 SNRNP48Q6IEG0 339 aaKnown RBP15.27■□□□□ 0.04
TSC2-220ENST00000568238 TICAM2Q86XR7 235 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 KIFC2Q96AC6 838 aa15.27■□□□□ 0.04
TSC2-220ENST00000568238 ZMYND8Q9ULU4 1186 aaPredicted RBP15.27■□□□□ 0.04
TSC2-220ENST00000568238 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.27■□□□□ 0.04
TSC2-220ENST00000568238 CTDP1Q9Y5B0 961 aaPredicted RBP15.27■□□□□ 0.04
TSC2-220ENST00000568238 SMCHD1A6NHR9 2005 aa15.27■□□□□ 0.03
TSC2-220ENST00000568238 A0A0D9SFI3 127 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 A0A1W2PPC1 479 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 TSPY2A6NKD2 308 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 DNM1LO00429 736 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 CTDSPL2Q05D32 466 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 SLFN13Q68D06 897 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 FAM227BQ96M60 508 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 ANAPC4Q9UJX5 808 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 FEM1BQ9UK73 627 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 ISY1Q9ULR0 285 aaKnown RBP15.26■□□□□ 0.03
TSC2-220ENST00000568238 GTF3C3Q9Y5Q9 886 aa15.26■□□□□ 0.03
TSC2-220ENST00000568238 MCM3APO60318 1980 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 ZBED4O75132 1171 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 BMP3P12645 472 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 LRRC26Q2I0M4 334 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 MCMDC2Q4G0Z9 681 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 SENP6Q9GZR1 1112 aaPredicted RBP15.25■□□□□ 0.03
TSC2-220ENST00000568238 SLC38A10Q9HBR0 1119 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 NRBP1Q9UHY1 535 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 STX8Q9UNK0 236 aa15.25■□□□□ 0.03
TSC2-220ENST00000568238 DIS3Q9Y2L1 958 aaKnown RBP15.25■□□□□ 0.03
TSC2-220ENST00000568238 ZMYM6O95789 1325 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 KBTBD13C9JR72 458 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 ATP2A1O14983 1001 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 SYN1P17600 705 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 SDSP20132 328 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 NMIQ13287 307 aaPredicted RBP15.24■□□□□ 0.03
TSC2-220ENST00000568238 ALX1Q15699 326 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 ZNF792Q3KQV3 632 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 PRAMEF19Q5SWL8 479 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 ANO1Q5XXA6 986 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 CPXCR1Q8N123 301 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 ARRDC4Q8NCT1 418 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 GMCL1Q96IK5 515 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 TINF2Q9BSI4 451 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 RIPK3Q9Y572 518 aa15.24■□□□□ 0.03
TSC2-220ENST00000568238 CCDC171Q6TFL3 1326 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 LTBP2Q14767 1821 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 ORC4O43929 436 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 RANBP6O60518 1105 aaKnown RBP15.23■□□□□ 0.03
TSC2-220ENST00000568238 SLC1A4P43007 532 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 SLC4A3P48751 1232 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 STAT2P52630 851 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 OAZ1P54368 228 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 IKQ13123 557 aaPredicted RBP15.23■□□□□ 0.03
TSC2-220ENST00000568238 GJC2Q5T442 439 aaPredicted RBP15.23■□□□□ 0.03
TSC2-220ENST00000568238 ZNF589Q86UQ0 364 aaPredicted RBP15.23■□□□□ 0.03
TSC2-220ENST00000568238 GDF15Q99988 308 aa15.23■□□□□ 0.03
TSC2-220ENST00000568238 RAVER2Q9HCJ3 691 aaKnown RBP15.23■□□□□ 0.03
TSC2-220ENST00000568238 TMEM232C9JQI7 657 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 NMT2O60551 498 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 FGAP02671 866 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 MYCNP04198 464 aaPredicted RBP15.22■□□□□ 0.03
TSC2-220ENST00000568238 FDX1P10109 184 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 HSPD1P10809 573 aaKnown RBP15.22■□□□□ 0.03
TSC2-220ENST00000568238 BMP8BP34820 402 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 MAGEA10P43363 369 aaPredicted RBP15.22■□□□□ 0.03
TSC2-220ENST00000568238 ATN1P54259 1190 aaPredicted RBP15.22■□□□□ 0.03
TSC2-220ENST00000568238 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.22■□□□□ 0.03
TSC2-220ENST00000568238 FAM160B2Q86V87 743 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 MSL3Q8N5Y2 521 aaKnown RBP15.22■□□□□ 0.03
TSC2-220ENST00000568238 DDX11Q96FC9 970 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 INCENPQ9NQS7 918 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 IL17RBQ9NRM6 502 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 FBXO40Q9UH90 709 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 CNPY2Q9Y2B0 182 aa15.22■□□□□ 0.03
TSC2-220ENST00000568238 SYNGAP1Q96PV0 1343 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 DNAJC25-GNG10A0A024R161 153 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 FGRP09769 529 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 RARBP10826 455 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 MFAP1P55081 439 aaKnown RBP15.21■□□□□ 0.03
TSC2-220ENST00000568238 CHST13Q8NET6 341 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 CHURC1Q8WUH1 139 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 CHMP4CQ96CF2 233 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 TOMM22Q9NS69 142 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 DIAPH3Q9NSV4 1193 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 TACC3Q9Y6A5 838 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 COL6A3P12111 3177 aa15.21■□□□□ 0.03
TSC2-220ENST00000568238 LRRC37A2A6NM11 1700 aa15.2■□□□□ 0.02
TSC2-220ENST00000568238 AKR1A1P14550 325 aa15.2■□□□□ 0.02
TSC2-220ENST00000568238 TAL1P17542 331 aaPredicted RBP15.2■□□□□ 0.02
TSC2-220ENST00000568238 MCCP23508 829 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms