RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IQUBQ8NA54 791 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 ZNF622Q969S3 477 aaKnown RBP eCLIP23.03■■□□□ 1.28
CLN3-230ENST00000568076 GSDMAQ96QA5 445 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 SMARCA1P28370 1054 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 ERCC5P28715 1186 aaPredicted RBP23.03■■□□□ 1.28
CLN3-230ENST00000568076 CDC25AP30304 524 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 NAPAP54920 295 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 PTPN21Q16825 1174 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 HHIPL2Q6UWX4 724 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 CLEC10AQ8IUN9 316 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 VSTM4Q8IW00 320 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 PIGSQ96S52 555 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 UBA5Q9GZZ9 404 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 DBNDD1Q9H9R9 158 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 DYNC1I1O14576 645 aa23.02■■□□□ 1.28
CLN3-230ENST00000568076 RRP36Q96EU6 259 aaKnown RBP23.02■■□□□ 1.28
CLN3-230ENST00000568076 VAT1LQ9HCJ6 419 aa23.02■■□□□ 1.28
CLN3-230ENST00000568076 FRMPD2Q68DX3 1309 aaPredicted RBP23.02■■□□□ 1.28
CLN3-230ENST00000568076 SFPQP23246 707 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-230ENST00000568076 GTF2F1P35269 517 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-230ENST00000568076 CUL4BQ13620 913 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 LRRC47Q8N1G4 583 aaKnown RBP23.01■■□□□ 1.27
CLN3-230ENST00000568076 RIOX1Q9H6W3 641 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 SAMSN1Q9NSI8 373 aaKnown RBP23.01■■□□□ 1.27
CLN3-230ENST00000568076 SERPINB13Q9UIV8 391 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 G3V3G9 751 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 TNNT1P13805 278 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 SHMT1P34896 483 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 EIF6P56537 245 aaKnown RBP23.01■■□□□ 1.27
CLN3-230ENST00000568076 NFIAQ12857 509 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 DCAF8Q5TAQ9 597 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 SMYD4Q8IYR2 804 aaPredicted RBP23.01■■□□□ 1.27
CLN3-230ENST00000568076 TEKT1Q969V4 418 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 BLZF1Q9H2G9 400 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 KCND1Q9NSA2 647 aa23.01■■□□□ 1.27
CLN3-230ENST00000568076 SMCO2A6NFE2 343 aa23■■□□□ 1.27
CLN3-230ENST00000568076 C2CD5Q86YS7 1000 aa23■■□□□ 1.27
CLN3-230ENST00000568076 CCAR2Q8N163 923 aaKnown RBP23■■□□□ 1.27
CLN3-230ENST00000568076 TMX4Q9H1E5 349 aaPredicted RBP23■■□□□ 1.27
CLN3-230ENST00000568076 PPP1R3GB7ZBB8 358 aa23■■□□□ 1.27
CLN3-230ENST00000568076 SLURP2P0DP57 97 aa23■■□□□ 1.27
CLN3-230ENST00000568076 SNHG28P0DPA3 235 aa23■■□□□ 1.27
CLN3-230ENST00000568076 CT47A1Q5JQC4 288 aaPredicted RBP23■■□□□ 1.27
CLN3-230ENST00000568076 PODNQ7Z5L7 613 aa23■■□□□ 1.27
CLN3-230ENST00000568076 CCDC12Q8WUD4 166 aaPredicted RBP23■■□□□ 1.27
CLN3-230ENST00000568076 PYM1Q9BRP8 204 aaKnown RBP23■■□□□ 1.27
CLN3-230ENST00000568076 SEC63Q9UGP8 760 aaKnown RBP23■■□□□ 1.27
CLN3-230ENST00000568076 PP2D1A8MPX8 630 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 RIOK3O14730 519 aaKnown RBP22.99■■□□□ 1.27
CLN3-230ENST00000568076 CRKP46108 304 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 KARSQ15046 597 aaKnown RBP22.99■■□□□ 1.27
CLN3-230ENST00000568076 DTHD1Q6ZMT9 781 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 ZFPM1Q8IX07 1006 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 SWAP70Q9UH65 585 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 PCDHAC2Q9Y5I4 1007 aa22.99■■□□□ 1.27
CLN3-230ENST00000568076 E4F1Q66K89 784 aaPredicted RBP22.98■■□□□ 1.27
CLN3-230ENST00000568076 KLHL10Q6JEL2 608 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 NYAP1Q6ZVC0 841 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 KRT25Q7Z3Z0 450 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 C6orf50Q9HD87 102 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 TRMT1Q9NXH9 659 aaKnown RBP22.98■■□□□ 1.27
CLN3-230ENST00000568076 MYO3BQ8WXR4 1341 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 CDK11BP21127 795 aaKnown RBP22.98■■□□□ 1.27
CLN3-230ENST00000568076 DISC1Q9NRI5 854 aa22.98■■□□□ 1.27
CLN3-230ENST00000568076 MYH8P13535 1937 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 GTPBP6O43824 516 aaPredicted RBP22.97■■□□□ 1.27
CLN3-230ENST00000568076 GNA11P29992 359 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 STX17P56962 302 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 DHX8Q14562 1220 aaKnown RBP22.97■■□□□ 1.27
CLN3-230ENST00000568076 NONOQ15233 471 aaKnown RBP eCLIP22.97■■□□□ 1.27
CLN3-230ENST00000568076 ASPRV1Q53RT3 343 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 NAALADL2Q58DX5 795 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 TSC1Q92574 1164 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 ZDHHC15Q96MV8 337 aa22.97■■□□□ 1.27
CLN3-230ENST00000568076 TTLL1O95922 423 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 TXLNAP40222 546 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 RBM10P98175 930 aaKnown RBP22.96■■□□□ 1.27
CLN3-230ENST00000568076 GOLGA8FQ08AF8 430 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 GOLGA8DPQ0D2H9 430 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 SPATA1Q5VX52 437 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 TNS1Q9HBL0 1735 aaKnown RBP22.96■■□□□ 1.27
CLN3-230ENST00000568076 SYNRGQ9UMZ2 1314 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 SLX4Q8IY92 1834 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 ESYT2A0FGR8 921 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 LAD1O00515 517 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 PRPHP41219 470 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 SOGA3Q5TF21 947 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 STYK1Q6J9G0 422 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 APTXQ7Z2E3 356 aaKnown RBP22.96■■□□□ 1.27
CLN3-230ENST00000568076 KIAA0825Q8IV33 1275 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 TMX1Q9H3N1 280 aa22.96■■□□□ 1.27
CLN3-230ENST00000568076 C10orf71Q711Q0 1435 aa22.95■■□□□ 1.27
CLN3-230ENST00000568076 H0YIN7 160 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 HLA-DOAP06340 250 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 STAT6P42226 847 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 CACNB3P54284 484 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 TBX2Q13207 712 aaPredicted RBP22.95■■□□□ 1.26
CLN3-230ENST00000568076 LETM2Q2VYF4 491 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 DACT2Q5SW24 774 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 AEBP2Q6ZN18 517 aaPredicted RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms