RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 HTATIP2Q9BUP3 242 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 TACC3Q9Y6A5 838 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 MKI67P46013 3256 aaKnown RBP22.08■■□□□ 1.13
CLN3-227ENST00000567495 NMT2O60551 498 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 STAT2P52630 851 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 KCTD2Q14681 263 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 NPLOC4Q8TAT6 608 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 ESR2Q92731 530 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 KIFC2Q96AC6 838 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 SLC38A10Q9HBR0 1119 aa22.08■■□□□ 1.13
CLN3-227ENST00000567495 RLFQ13129 1914 aa22.08■■□□□ 1.12
CLN3-227ENST00000567495 TMEM232C9JQI7 657 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 TOP1P11387 765 aaKnown RBP22.07■■□□□ 1.12
CLN3-227ENST00000567495 MCCP23508 829 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 IMMTQ16891 758 aaKnown RBP22.07■■□□□ 1.12
CLN3-227ENST00000567495 CCDC178Q5BJE1 867 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 RCSD1Q6JBY9 416 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 MMP19Q99542 508 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 NBPF3Q9H094 633 aa22.07■■□□□ 1.12
CLN3-227ENST00000567495 ISY1Q9ULR0 285 aaKnown RBP22.07■■□□□ 1.12
CLN3-227ENST00000567495 A0A0G2JMZ2 1700 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 MSCO60682 206 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 COBLO75128 1261 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 IGHA2P01877 340 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 SNRNP48Q6IEG0 339 aaKnown RBP22.06■■□□□ 1.12
CLN3-227ENST00000567495 TBC1D10CQ8IV04 446 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 DCAF4Q8WV16 495 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 FLRT1Q9NZU1 646 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 FBXO40Q9UH90 709 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 OGDHLQ9ULD0 1010 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 DIS3Q9Y2L1 958 aaKnown RBP22.06■■□□□ 1.12
CLN3-227ENST00000567495 PLXNB2O15031 1838 aa22.06■■□□□ 1.12
CLN3-227ENST00000567495 CHMLP26374 656 aa22.05■■□□□ 1.12
CLN3-227ENST00000567495 IKQ13123 557 aaPredicted RBP22.05■■□□□ 1.12
CLN3-227ENST00000567495 CENPQQ7L2Z9 268 aaPredicted RBP22.05■■□□□ 1.12
CLN3-227ENST00000567495 NECAB2Q7Z6G3 386 aa22.04■■□□□ 1.12
CLN3-227ENST00000567495 IQCA1Q86XH1 822 aa22.04■■□□□ 1.12
CLN3-227ENST00000567495 CPXCR1Q8N123 301 aa22.04■■□□□ 1.12
CLN3-227ENST00000567495 CCND3P30281 292 aaPredicted RBP22.03■■□□□ 1.12
CLN3-227ENST00000567495 CYP2C19P33261 490 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.03■■□□□ 1.12
CLN3-227ENST00000567495 DGKHQ86XP1 1220 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 CHST13Q8NET6 341 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 TMEM47Q9BQJ4 181 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 KRT23Q9C075 422 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 CNNM2Q9H8M5 875 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 NRBP1Q9UHY1 535 aa22.03■■□□□ 1.12
CLN3-227ENST00000567495 KCTD1Q719H9 257 aa22.02■■□□□ 1.12
CLN3-227ENST00000567495 DPF3Q92784 378 aa22.02■■□□□ 1.12
CLN3-227ENST00000567495 DDX11Q96FC9 970 aa22.02■■□□□ 1.12
CLN3-227ENST00000567495 MAML3Q96JK9 1138 aa22.02■■□□□ 1.12
CLN3-227ENST00000567495 RAVER2Q9HCJ3 691 aaKnown RBP22.02■■□□□ 1.12
CLN3-227ENST00000567495 CCDC96Q2M329 555 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 ZNF792Q3KQV3 632 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 TKFCQ3LXA3 575 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 LHX8Q68G74 356 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 MSL3Q8N5Y2 521 aaKnown RBP22.01■■□□□ 1.11
CLN3-227ENST00000567495 PAWRQ96IZ0 340 aaKnown RBP22.01■■□□□ 1.11
CLN3-227ENST00000567495 DDX20Q9UHI6 824 aaKnown RBP22.01■■□□□ 1.11
CLN3-227ENST00000567495 RIPK3Q9Y572 518 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 NEDD4P46934 1319 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 ZNF236Q9UL36 1845 aa22.01■■□□□ 1.11
CLN3-227ENST00000567495 KDM4AO75164 1064 aa22■■□□□ 1.11
CLN3-227ENST00000567495 CYBAP13498 195 aa22■■□□□ 1.11
CLN3-227ENST00000567495 CNGA1P29973 690 aa22■■□□□ 1.11
CLN3-227ENST00000567495 BTNL9Q6UXG8 535 aa22■■□□□ 1.11
CLN3-227ENST00000567495 ANKS1AQ92625 1134 aa22■■□□□ 1.11
CLN3-227ENST00000567495 PNMA2Q9UL42 364 aa22■■□□□ 1.11
CLN3-227ENST00000567495 NR2E3Q9Y5X4 410 aa22■■□□□ 1.11
CLN3-227ENST00000567495 U3KPZ7 1027 aaPredicted RBP22■■□□□ 1.11
CLN3-227ENST00000567495 SGSM2O43147 1006 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 PGK2P07205 417 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 SLC4A3P48751 1232 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 TINF2Q9BSI4 451 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 IL25Q9H293 177 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 PRR12Q9ULL5 1215 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 MTMR7Q9Y216 660 aa21.99■■□□□ 1.11
CLN3-227ENST00000567495 MYH4Q9Y623 1939 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 DNAJC25-GNG10A0A024R161 153 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 SEPT4O43236 478 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 PDHBP11177 359 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 ZNF467Q7Z7K2 595 aaPredicted RBP21.98■■□□□ 1.11
CLN3-227ENST00000567495 ANKRD35Q8N283 1001 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 ZSCAN10Q96SZ4 725 aaPredicted RBP21.98■■□□□ 1.11
CLN3-227ENST00000567495 PARP14Q460N5 1801 aa21.98■■□□□ 1.11
CLN3-227ENST00000567495 B4E1Z4 1266 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 SNHG28P0DPA3 235 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 MNX1P50219 401 aaPredicted RBP21.97■■□□□ 1.11
CLN3-227ENST00000567495 TRDNQ13061 729 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 GPATCH4Q5T3I0 446 aaKnown RBP21.97■■□□□ 1.11
CLN3-227ENST00000567495 SYDE2Q5VT97 1194 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 TRPV1Q8NER1 839 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 UBAC1Q9BSL1 405 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 C11orf49Q9H6J7 331 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 ACAD9Q9H845 621 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 ZSWIM5Q9P217 1185 aa21.97■■□□□ 1.11
CLN3-227ENST00000567495 ZNF543Q08ER8 600 aa21.96■■□□□ 1.11
CLN3-227ENST00000567495 DIS3LQ8TF46 1054 aaKnown RBP21.96■■□□□ 1.11
CLN3-227ENST00000567495 CHMP4CQ96CF2 233 aa21.96■■□□□ 1.11
CLN3-227ENST00000567495 KAT14Q9H8E8 782 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms