RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 C1orf53Q5VUE5 145 aa17.71■□□□□ 0.43
CLN3-222ENST00000566083 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLN3-222ENST00000566083 ZNF467Q7Z7K2 595 aaPredicted RBP17.71■□□□□ 0.43
CLN3-222ENST00000566083 RNF180Q86T96 592 aa17.71■□□□□ 0.43
CLN3-222ENST00000566083 CHST13Q8NET6 341 aa17.71■□□□□ 0.43
CLN3-222ENST00000566083 CHURC1Q8WUH1 139 aa17.71■□□□□ 0.43
CLN3-222ENST00000566083 NUP88Q99567 741 aaPredicted RBP17.71■□□□□ 0.43
CLN3-222ENST00000566083 COL11A1P12107 1806 aaPredicted RBP17.7■□□□□ 0.42
CLN3-222ENST00000566083 BMP3P12645 472 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 AKR1A1P14550 325 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 TFAP4Q01664 338 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 LRRC41Q15345 812 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 PRAMEF19Q5SWL8 479 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 SLC39A5Q6ZMH5 540 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 FAM160B2Q86V87 743 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 OTUD7AQ8TE49 926 aaPredicted RBP17.7■□□□□ 0.42
CLN3-222ENST00000566083 KIFC2Q96AC6 838 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 SEC62Q99442 399 aaKnown RBP17.7■□□□□ 0.42
CLN3-222ENST00000566083 SLC38A10Q9HBR0 1119 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 HELLSQ9NRZ9 838 aa17.7■□□□□ 0.42
CLN3-222ENST00000566083 SYNGAP1Q96PV0 1343 aa17.69■□□□□ 0.42
CLN3-222ENST00000566083 SALL3Q9BXA9 1300 aa17.69■□□□□ 0.42
CLN3-222ENST00000566083 ATN1P54259 1190 aaPredicted RBP17.69■□□□□ 0.42
CLN3-222ENST00000566083 RTP1P59025 263 aa17.69■□□□□ 0.42
CLN3-222ENST00000566083 SLFN13Q68D06 897 aa17.69■□□□□ 0.42
CLN3-222ENST00000566083 XPNPEP3Q9NQH7 507 aa17.69■□□□□ 0.42
CLN3-222ENST00000566083 MYH4Q9Y623 1939 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 SMCHD1A6NHR9 2005 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 TSPY2A6NKD2 308 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 MYCNP04198 464 aaPredicted RBP17.68■□□□□ 0.42
CLN3-222ENST00000566083 SLC1A4P43007 532 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 STAT2P52630 851 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 PDE1AP54750 535 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 SNX17Q15036 470 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 MAMDC4Q6UXC1 1216 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 CPXCR1Q8N123 301 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 ANKRD35Q8N283 1001 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 GMCL1Q96IK5 515 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 CRBNQ96SW2 442 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 ANAPC4Q9UJX5 808 aa17.68■□□□□ 0.42
CLN3-222ENST00000566083 DNAJC25-GNG10A0A024R161 153 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 SOX1O00570 391 aaPredicted RBP17.67■□□□□ 0.42
CLN3-222ENST00000566083 PLA2G6O60733 806 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 ALX1Q15699 326 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 FAM47AQ5JRC9 791 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 ANO1Q5XXA6 986 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 TSEN34Q9BSV6 310 aaKnown RBP17.67■□□□□ 0.42
CLN3-222ENST00000566083 FAM184BQ9ULE4 1060 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 PHF24Q9UPV7 400 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 ATP11BQ9Y2G3 1177 aa17.67■□□□□ 0.42
CLN3-222ENST00000566083 ZNF865P0CJ78 1059 aaPredicted RBP17.66■□□□□ 0.42
CLN3-222ENST00000566083 ADCYAP1R1P41586 468 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 MDM2Q00987 491 aaPredicted RBP17.66■□□□□ 0.42
CLN3-222ENST00000566083 TKFCQ3LXA3 575 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 LRRC47Q8N1G4 583 aaKnown RBP17.66■□□□□ 0.42
CLN3-222ENST00000566083 STAG1Q8WVM7 1258 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 LRCH3Q96II8 777 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 RWDD1Q9H446 243 aaPredicted RBP17.66■□□□□ 0.42
CLN3-222ENST00000566083 RAVER2Q9HCJ3 691 aaKnown RBP17.66■□□□□ 0.42
CLN3-222ENST00000566083 STX8Q9UNK0 236 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 RIPK3Q9Y572 518 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 PLXNA1Q9UIW2 1896 aa17.66■□□□□ 0.42
CLN3-222ENST00000566083 TMEM232C9JQI7 657 aa17.65■□□□□ 0.42
CLN3-222ENST00000566083 ORC4O43929 436 aa17.65■□□□□ 0.42
CLN3-222ENST00000566083 IKQ13123 557 aaPredicted RBP17.65■□□□□ 0.42
CLN3-222ENST00000566083 ABHD16BQ9H3Z7 469 aa17.65■□□□□ 0.42
CLN3-222ENST00000566083 ISY1Q9ULR0 285 aaKnown RBP17.65■□□□□ 0.42
CLN3-222ENST00000566083 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-222ENST00000566083 SZT2Q5T011 3432 aa17.65■□□□□ 0.42
CLN3-222ENST00000566083 PCP11498 1178 aaKnown RBP17.64■□□□□ 0.42
CLN3-222ENST00000566083 SLC4A3P48751 1232 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 MFAP1P55081 439 aaKnown RBP17.64■□□□□ 0.42
CLN3-222ENST00000566083 MCMDC2Q4G0Z9 681 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 RCSD1Q6JBY9 416 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 NUP133Q8WUM0 1156 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 ACAD9Q9H845 621 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 SPC25Q9HBM1 224 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 TACC3Q9Y6A5 838 aa17.64■□□□□ 0.42
CLN3-222ENST00000566083 LAMA3Q16787 3333 aa17.64■□□□□ 0.41
CLN3-222ENST00000566083 MOXD2PA6NHM9 499 aa17.64■□□□□ 0.41
CLN3-222ENST00000566083 RANBP6O60518 1105 aaKnown RBP17.64■□□□□ 0.41
CLN3-222ENST00000566083 FGRP09769 529 aa17.64■□□□□ 0.41
CLN3-222ENST00000566083 NT5C2P49902 561 aa17.64■□□□□ 0.41
CLN3-222ENST00000566083 FERMT2Q96AC1 680 aa17.64■□□□□ 0.41
CLN3-222ENST00000566083 DUSP11O75319 330 aaKnown RBP17.63■□□□□ 0.41
CLN3-222ENST00000566083 SNAI1O95863 264 aaPredicted RBP17.63■□□□□ 0.41
CLN3-222ENST00000566083 PGK1P00558 417 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 MCCP23508 829 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 CTDSPL2Q05D32 466 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 ACVR2BQ13705 512 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 TRIM60Q495X7 471 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 CCDC129Q6ZRS4 1044 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 PCSK9Q8NBP7 692 aaKnown RBP17.63■□□□□ 0.41
CLN3-222ENST00000566083 ZHX1Q9UKY1 873 aaPredicted RBP17.63■□□□□ 0.41
CLN3-222ENST00000566083 PNMA2Q9UL42 364 aa17.63■□□□□ 0.41
CLN3-222ENST00000566083 ZMYM6O95789 1325 aa17.62■□□□□ 0.41
CLN3-222ENST00000566083 FOXP2O15409 715 aa17.62■□□□□ 0.41
CLN3-222ENST00000566083 TAL1P17542 331 aaPredicted RBP17.62■□□□□ 0.41
CLN3-222ENST00000566083 DEFB123Q8N688 67 aa17.62■□□□□ 0.41
CLN3-222ENST00000566083 DCAF4Q8WV16 495 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms