RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DDX11Q96FC9 970 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 TINF2Q9BSI4 451 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 TEX13BQ9BXU2 312 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 RWDD1Q9H446 243 aaPredicted RBP12.14□□□□□ -0.47
LDLR-214ENST00000560628 HELLSQ9NRZ9 838 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 FEM1BQ9UK73 627 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 MTMR7Q9Y216 660 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 ALPK3Q96L96 1907 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 A0A0D9SFI3 127 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 TSPY2A6NKD2 308 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 TMEM232C9JQI7 657 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 DNM1LO00429 736 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 SOX1O00570 391 aaPredicted RBP12.13□□□□□ -0.47
LDLR-214ENST00000560628 RANBP6O60518 1105 aaKnown RBP12.13□□□□□ -0.47
LDLR-214ENST00000560628 NMT2O60551 498 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 MCCP23508 829 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 COPB2P35606 906 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 MCMDC2Q4G0Z9 681 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 SLC38A10Q9HBR0 1119 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 IL17RBQ9NRM6 502 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 STX8Q9UNK0 236 aa12.13□□□□□ -0.47
LDLR-214ENST00000560628 DIS3Q9Y2L1 958 aaKnown RBP12.13□□□□□ -0.47
LDLR-214ENST00000560628 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.13□□□□□ -0.47
LDLR-214ENST00000560628 A0A0G2JMZ2 1700 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 KBTBD13C9JR72 458 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 FGAP02671 866 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 BMP8BP34820 402 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 ADCYAP1R1P41586 468 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 SNAP25P60880 206 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 MDM2Q00987 491 aaPredicted RBP12.12□□□□□ -0.47
LDLR-214ENST00000560628 IKQ13123 557 aaPredicted RBP12.12□□□□□ -0.47
LDLR-214ENST00000560628 NMIQ13287 307 aaPredicted RBP12.12□□□□□ -0.47
LDLR-214ENST00000560628 AAMPQ13685 434 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 LRRC41Q15345 812 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 ALX1Q15699 326 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 RRP12Q5JTH9 1297 aaKnown RBP12.12□□□□□ -0.47
LDLR-214ENST00000560628 SMC5Q8IY18 1101 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 FERMT2Q96AC1 680 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 UBE2OQ9C0C9 1292 aaKnown RBP12.12□□□□□ -0.47
LDLR-214ENST00000560628 TOMM22Q9NS69 142 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 SYNPO2Q9UMS6 1093 aa12.12□□□□□ -0.47
LDLR-214ENST00000560628 PLIN4Q96Q06 1357 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 A0A1W2PPC1 479 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ATP2A1O14983 1001 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 PGK1P00558 417 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ZNF865P0CJ78 1059 aaPredicted RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 HSPD1P10809 573 aaKnown RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 SLC1A4P43007 532 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 RTP1P59025 263 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 HAND2P61296 217 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 SLC39A5Q6ZMH5 540 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 KCTD1Q719H9 257 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 RASGRP2Q7LDG7 609 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ZNF589Q86UQ0 364 aaPredicted RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 CHD1LQ86WJ1 897 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 PLEKHM2Q8IWE5 1019 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ANKRD35Q8N283 1001 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 CHURC1Q8WUH1 139 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 STAG1Q8WVM7 1258 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 LRCH3Q96II8 777 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 HOMER2Q9NSB8 354 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ANAPC4Q9UJX5 808 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 ATP11BQ9Y2G3 1177 aa12.11□□□□□ -0.47
LDLR-214ENST00000560628 GREB1LQ9C091 1923 aaPredicted RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 ZNFX1Q9P2E3 1918 aaKnown RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 COL11A1P12107 1806 aaPredicted RBP12.11□□□□□ -0.47
LDLR-214ENST00000560628 PARP14Q460N5 1801 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 DNAJC25-GNG10A0A024R161 153 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 SNAI1O95863 264 aaPredicted RBP12.1□□□□□ -0.47
LDLR-214ENST00000560628 RARBP10826 455 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 SDSP20132 328 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 STAT2P52630 851 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 NUCB1Q02818 461 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 RCSD1Q6JBY9 416 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 CCDC174Q6PII3 467 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 FAM160B2Q86V87 743 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 LENG1Q96BZ8 264 aaPredicted RBP12.1□□□□□ -0.47
LDLR-214ENST00000560628 GMCL1Q96IK5 515 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 AGBL1Q96MI9 1066 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 XPNPEP3Q9NQH7 507 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 NRBP1Q9UHY1 535 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 CNPY2Q9Y2B0 182 aa12.1□□□□□ -0.47
LDLR-214ENST00000560628 SUPT16HQ9Y5B9 1047 aaKnown RBP12.1□□□□□ -0.47
LDLR-214ENST00000560628 ZNF236Q9UL36 1845 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 ORC4O43929 436 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 FGRP09769 529 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 PPP4R3BQ5MIZ7 849 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 CHST13Q8NET6 341 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 LBHD1Q9BQE6 289 aaPredicted RBP12.09□□□□□ -0.47
LDLR-214ENST00000560628 ZHX1Q9UKY1 873 aaPredicted RBP12.09□□□□□ -0.47
LDLR-214ENST00000560628 SMCHD1A6NHR9 2005 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 CCDC171Q6TFL3 1326 aa12.09□□□□□ -0.47
LDLR-214ENST00000560628 MYH4Q9Y623 1939 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 FDX1P10109 184 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 ALAS1P13196 640 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 AKR1A1P14550 325 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 SLC16A2P36021 539 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 OAZ1P54368 228 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 CNTN2Q02246 1040 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 CCDC96Q2M329 555 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms