RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PDILTQ8N807 584 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 PNMA1Q8ND90 353 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 CCDC12Q8WUD4 166 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 RPGRQ92834 1020 aaKnown RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 TMX1Q9H3N1 280 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 MKNK2Q9HBH9 465 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 TRMT1Q9NXH9 659 aaKnown RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 MKRN1Q9UHC7 482 aaKnown RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 PCDHA4Q9UN74 947 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 LRRC37AA6NMS7 1700 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 WTIPA6NIX2 430 aaPredicted RBP8.24□□□□□ -1.09
VPS13C-206ENST00000558338 LAD1O00515 517 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 FOXN1O15353 648 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 MYL1P05976 194 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 TSPY3P0CV98 308 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 TSPY8P0CW00 308 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 KCNQ4P56696 695 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 TFAP4Q01664 338 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 TBX2Q13207 712 aaPredicted RBP8.24□□□□□ -1.09
VPS13C-206ENST00000558338 PTGDRQ13258 359 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 NPY5RQ15761 445 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 FILIP1LQ4L180 1135 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 SPATA1Q5VX52 437 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 TMC4Q7Z404 712 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 CERKQ8TCT0 537 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 SHISA4Q96DD7 197 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 PAGE5Q96GU1 130 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 PCDHB8Q9UN66 801 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 UBR3Q6ZT12 1888 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 CDK5RAP2Q96SN8 1893 aa8.24□□□□□ -1.09
VPS13C-206ENST00000558338 A0A1B0GTH6 734 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 CCDC194A0A1B0GVG4 234 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 VWA3AA6NCI4 1184 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 STX10O60499 249 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SLU7O95391 586 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 USP17L8P0C7I0 530 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 CYP2D6P10635 497 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SPAG1Q07617 926 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 NCBP1Q09161 790 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 DPYDQ12882 1025 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 ORC2Q13416 577 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF174Q15697 407 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 RCSD1Q6JBY9 416 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 PIK3AP1Q6ZUJ8 805 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 ANKRD20A12PQ8NF67 263 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 TBC1D22AQ8WUA7 517 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 DPF2Q92785 391 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 RBM17Q96I25 401 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 NAA15Q9BXJ9 866 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SRRTQ9BXP5 876 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 GTPBP4Q9BZE4 634 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 UBAP1LF5GYI3 381 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SMIM22K7EJ46 135 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 TPM1P09493 284 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SMARCA1P28370 1054 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 FMR1Q06787 632 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 NFIXQ14938 502 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 EARS2Q5JPH6 523 aaKnown RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 HOMER1Q86YM7 354 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SH3RF3Q8TEJ3 882 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 EPSTI1Q96J88 318 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 FEZ1Q99689 392 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 BAG1Q99933 345 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-206ENST00000558338 SPZ1Q9BXG8 430 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 L2HGDHQ9H9P8 463 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 MAGEF1Q9HAY2 307 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 GGA1Q9UJY5 639 aa8.23□□□□□ -1.09
VPS13C-206ENST00000558338 FOCADQ5VW36 1801 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 hCG_1642624A0A1W2PR95 340 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 hCG_1984214I3L0E3 225 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 NMT2O60551 498 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 BBOX1O75936 387 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 PYGBP11216 843 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 IL1R1P14778 569 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 PRPHP41219 470 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 AFMP43652 599 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 ETF1P62495 437 aaKnown RBP8.22□□□□□ -1.09
VPS13C-206ENST00000558338 CUL4BQ13620 913 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 TRIM14Q14142 442 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 CRY2Q49AN0 593 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 PRR5LQ6MZQ0 368 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 FAM196AQ6ZSG2 479 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 C16orf86Q6ZW13 317 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 USP49Q70CQ1 688 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 TXNRD3Q86VQ6 643 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 GRAMD1CQ8IYS0 662 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF713Q8N859 430 aaPredicted RBP8.22□□□□□ -1.09
VPS13C-206ENST00000558338 CCDC51Q96ER9 411 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 PANX2Q96RD6 677 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 RTFDC1Q9BY42 306 aaPredicted RBP8.22□□□□□ -1.09
VPS13C-206ENST00000558338 CUEDC2Q9H467 287 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 GOPCQ9HD26 462 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 INTS13Q9NVM9 706 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 C10orf71Q711Q0 1435 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 ITIH6Q6UXX5 1313 aa8.22□□□□□ -1.09
VPS13C-206ENST00000558338 A0A087X0B3 334 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 GPR75-ASB3A0A0A6YYF3 556 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 TMEM232C9JQI7 657 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 AKR1B15C9JRZ8 316 aaPredicted RBP8.21□□□□□ -1.09
VPS13C-206ENST00000558338 UFL1O94874 794 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms