RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CTAGE1Q96RT6 745 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 LIMA1Q9UHB6 759 aaKnown RBP14.55□□□□□ -0.08
LDLR-207ENST00000558013 RWDD2AQ9UIY3 292 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 GNPATO15228 680 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 KIF4BQ2VIQ3 1234 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 ZNF658Q5TYW1 1059 aaPredicted RBP14.54□□□□□ -0.08
LDLR-207ENST00000558013 C12orf60Q5U649 245 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 GPIHBP1Q8IV16 184 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 MAPKAPK5Q8IW41 473 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 GPR161Q8N6U8 529 aaKnown RBP14.54□□□□□ -0.08
LDLR-207ENST00000558013 CDCA7Q9BWT1 371 aaPredicted RBP14.54□□□□□ -0.08
LDLR-207ENST00000558013 MKNK2Q9HBH9 465 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 ARPP21Q9UBL0 812 aaPredicted RBP14.54□□□□□ -0.08
LDLR-207ENST00000558013 MKRN1Q9UHC7 482 aaKnown RBP14.54□□□□□ -0.08
LDLR-207ENST00000558013 PCDHA6Q9UN73 950 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 PCDHA8Q9Y5H6 950 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 LRRC10BA6NIK2 292 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 KIF5CO60282 957 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 CHMP4BP1P59074 171 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 HPS3Q969F9 1004 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 PNKPQ96T60 521 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 ANKIB1Q9P2G1 1089 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 PCDHA4Q9UN74 947 aa14.54□□□□□ -0.08
LDLR-207ENST00000558013 MYH8P13535 1937 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 TTC26A0AVF1 554 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 ARHGAP25P42331 645 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 ST5P78524 1137 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 SLC10A5Q5PT55 438 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 DISC1Q9NRI5 854 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 A0A1B0GUL6 1792 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 CCDC194A0A1B0GVG4 234 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 RHOXF2BP0C7M4 288 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 PCP11498 1178 aaKnown RBP14.53□□□□□ -0.08
LDLR-207ENST00000558013 KLK7P49862 253 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 CNGA4Q8IV77 575 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 RHOXF2Q9BQY4 288 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 ANKZF1Q9H8Y5 726 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 VAT1LQ9HCJ6 419 aa14.53□□□□□ -0.08
LDLR-207ENST00000558013 REXO2Q9Y3B8 237 aaKnown RBP14.53□□□□□ -0.08
LDLR-207ENST00000558013 M0R2N6 131 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 ENC1O14682 589 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 PARP1P09874 1014 aaKnown RBP14.52□□□□□ -0.08
LDLR-207ENST00000558013 SBK1Q52WX2 424 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 GOLGA1Q92805 767 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 FUT8Q9BYC5 575 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 TSPY3P0CV98 308 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 TSPY8P0CW00 308 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 KIF5BP33176 963 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 TRAPPC10P48553 1259 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 DTHD1Q6ZMT9 781 aa14.52□□□□□ -0.08
LDLR-207ENST00000558013 SMARCC1Q92922 1105 aaPredicted RBP14.52□□□□□ -0.08
LDLR-207ENST00000558013 THRAP3Q9Y2W1 955 aaKnown RBP14.52□□□□□ -0.08
LDLR-207ENST00000558013 ROBO1Q9Y6N7 1651 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 ERCC3P19447 782 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 NCAPH2Q6IBW4 605 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 ADSSL1Q8N142 457 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 RABGGTAQ92696 567 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 TMEM47Q9BQJ4 181 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.09
LDLR-207ENST00000558013 HDAC6Q9UBN7 1215 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 GUCA1BQ9UMX6 200 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 SCN7AQ01118 1682 aa14.52□□□□□ -0.09
LDLR-207ENST00000558013 SEMA3EO15041 775 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 KLRC4O43908 158 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 LONP1P36776 959 aaKnown RBP14.51□□□□□ -0.09
LDLR-207ENST00000558013 TXLNAP40222 546 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 USP17L2Q6R6M4 530 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 SRGAP1Q7Z6B7 1085 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 NAA15Q9BXJ9 866 aaKnown RBP14.51□□□□□ -0.09
LDLR-207ENST00000558013 ARFGAP3Q9NP61 516 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 CDC23Q9UJX2 597 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 LDHBP07195 334 aaKnown RBP14.51□□□□□ -0.09
LDLR-207ENST00000558013 OAS2P29728 719 aaKnown RBP14.51□□□□□ -0.09
LDLR-207ENST00000558013 UBA7P41226 1012 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 LONRF2Q1L5Z9 754 aa14.51□□□□□ -0.09
LDLR-207ENST00000558013 CT47A1Q5JQC4 288 aaPredicted RBP14.51□□□□□ -0.09
LDLR-207ENST00000558013 ZPR1O75312 459 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 CALML3P27482 149 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 SMC1AQ14683 1233 aaKnown RBP14.5□□□□□ -0.09
LDLR-207ENST00000558013 LETM2Q2VYF4 491 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 ARL6IP4Q66PJ3 421 aaKnown RBP14.5□□□□□ -0.09
LDLR-207ENST00000558013 NOA1Q8NC60 698 aaKnown RBP14.5□□□□□ -0.09
LDLR-207ENST00000558013 AGPAT5Q9NUQ2 364 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 NARFQ9UHQ1 456 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 CTAGE9A4FU28 777 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 B4DLN1 442 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 STXBP3O00186 592 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 FCER1AP12319 257 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 TXNRD1Q16881 649 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 NEK11Q8NG66 645 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 ARHGEF1Q92888 912 aaKnown RBP14.5□□□□□ -0.09
LDLR-207ENST00000558013 IRS2Q9Y4H2 1338 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 H3BQF6 201 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 MCM6Q14566 821 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 GRM4Q14833 912 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 TPTE2Q6XPS3 522 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 DGKHQ86XP1 1220 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 TMTC1Q8IUR5 882 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 ANKRD2Q9GZV1 360 aa14.5□□□□□ -0.09
LDLR-207ENST00000558013 ITIH6Q6UXX5 1313 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms