RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ZKSCAN2Q63HK3 967 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 CCSAPQ6IQ19 270 aaPredicted RBP9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 KLHDC9Q8NEP7 349 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 TOX2Q96NM4 488 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 TSEN34Q9BSV6 310 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 SH2D4AQ9H788 454 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 ARMT1Q9H993 441 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 IL1RAPL2Q9NP60 686 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 THEGQ9P2T0 379 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 PPP1R9AQ9ULJ8 1098 aa9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 DIS3Q9Y2L1 958 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-214ENST00000557507 MOXD2PA6NHM9 499 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 GOLIM4O00461 696 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 SNAI1O95863 264 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 EEF2P13639 858 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 CSF2RAP15509 400 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 STAT3P40763 770 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 TTF1Q15361 905 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 KCNA10Q16322 511 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 FAM83BQ5T0W9 1011 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 MFSD5Q6N075 450 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 CEP85Q6P2H3 762 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 ITPRIPQ8IWB1 547 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 ADAMTS19Q8TE59 1207 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 GAS2L1Q99501 681 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 DNAJC2Q99543 621 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 ZHX1Q9UKY1 873 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 CNPY2Q9Y2B0 182 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 MUC6Q6W4X9 2439 aa9.87□□□□□ -0.83
CCDC88C-214ENST00000557507 SYNGAP1Q96PV0 1343 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 MBD4O95243 580 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 CHGBP05060 677 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 ACRP10323 421 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 CST5P28325 142 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 CDK8P49336 464 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 CDK7P50613 346 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 PPIGQ13427 754 aaKnown RBP eCLIP9.86□□□□□ -0.833e-6■□□□□ 10.4
CCDC88C-214ENST00000557507 AKNAD1Q5T1N1 836 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 CCDC129Q6ZRS4 1044 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 ZNF365Q70YC5 407 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 NUP133Q8WUM0 1156 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 ATXN2LQ8WWM7 1075 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 FGD4Q96M96 766 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 ASB2Q96Q27 587 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 NUP88Q99567 741 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 PPP1R12CQ9BZL4 782 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 RIPK3Q9Y572 518 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 SCN10AQ9Y5Y9 1956 aa9.86□□□□□ -0.83
CCDC88C-214ENST00000557507 ELP1O95163 1332 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 MROH7Q68CQ1 1323 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 ZBED9Q6R2W3 1325 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 XIRP2A4UGR9 3374 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 PIEZO1Q92508 2521 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 DNAJC25-GNG10A0A024R161 153 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 RAD21O60216 631 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 DUSP11O75319 330 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 ASGR1P07306 291 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 C6orf222P0C671 652 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 COPB2P35606 906 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 CCDC85BQ15834 202 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 C12orf60Q5U649 245 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 SNRNP48Q6IEG0 339 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 MAMDC4Q6UXC1 1216 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 C16orf86Q6ZW13 317 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 ERC1Q8IUD2 1116 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 FAM126BQ8IXS8 530 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 FTSJ3Q8IY81 847 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 MSL3Q8N5Y2 521 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 CCDC17Q96LX7 622 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 GLT1D1Q96MS3 346 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 TEX13BQ9BXU2 312 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 UPF3AQ9H1J1 476 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 CXXC1Q9P0U4 656 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 FAM184BQ9ULE4 1060 aa9.85□□□□□ -0.83
CCDC88C-214ENST00000557507 UMODL1Q5DID0 1318 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 A0A0U1RQG5 324 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 USP17L12C9JPN9 530 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 USP17L21D6R901 530 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 ARVCFO00192 962 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 CTAGE5O15320 804 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 ADD2P35612 726 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 PLA2G5P39877 138 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 CCDC144BQ3MJ40 725 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 PSRC1Q6PGN9 363 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 RHPN1Q8TCX5 695 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 NECAB3Q96P71 396 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 UHRF1Q96T88 793 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 SLF1Q9BQI6 1058 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 NKX2-4Q9H2Z4 354 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 KANSL2Q9H9L4 492 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 GOPCQ9HD26 462 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 ATP8A2Q9NTI2 1148 aa9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 YBX2Q9Y2T7 364 aaKnown RBP9.84□□□□□ -0.83
CCDC88C-214ENST00000557507 APBB1O00213 710 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 CD4P01730 458 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 IGFBP4P22692 258 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 PTGS1P23219 599 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms