RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 DSCC1Q9BVC3 393 aa8.06□□□□□ -1.12
SLIRP-204ENST00000555890 UPF3BQ9BZI7 483 aaKnown RBP8.06□□□□□ -1.12
SLIRP-204ENST00000555890 ANKRD2Q9GZV1 360 aa8.06□□□□□ -1.12
SLIRP-204ENST00000555890 PDRG1Q9NUG6 133 aa8.06□□□□□ -1.12
SLIRP-204ENST00000555890 GNL3LQ9NVN8 582 aaKnown RBP8.06□□□□□ -1.12
SLIRP-204ENST00000555890 BSDC1Q9NW68 430 aaPredicted RBP8.06□□□□□ -1.12
SLIRP-204ENST00000555890 CTNNA3Q9UI47 895 aa8.06□□□□□ -1.12
SLIRP-204ENST00000555890 RIF1Q5UIP0 2472 aaKnown RBP8.06□□□□□ -1.12
SLIRP-204ENST00000555890 A0A1B0GUL6 1792 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 TAF1P21675 1872 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 UNCXA6NJT0 531 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 ACTN4O43707 911 aaKnown RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 LZTS3O60299 673 aaPredicted RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 PTMSP20962 102 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 MCCD1P59942 119 aaPredicted RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 RPS8P62241 208 aaKnown RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 ANKRD1Q15327 319 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 RUFY3Q7L099 469 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 ZNF589Q86UQ0 364 aaPredicted RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 SP8Q8IXZ3 490 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 SPATA5Q8NB90 893 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 FAM174AQ8TBP5 190 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 FAM200AQ8TCP9 573 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 APPBP2Q92624 585 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 RPGRQ92834 1020 aaKnown RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 GBP4Q96PP9 640 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 USB1Q9BQ65 265 aaKnown RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 BIN2Q9UBW5 565 aaPredicted RBP8.05□□□□□ -1.12
SLIRP-204ENST00000555890 LIMCH1Q9UPQ0 1083 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 ZFYVE26Q68DK2 2539 aa8.05□□□□□ -1.12
SLIRP-204ENST00000555890 SCN9AQ15858 1988 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 FRAT2O75474 233 aaPredicted RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 F12P00748 615 aaPredicted RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 GNRH1P01148 92 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 HMGB1P09429 215 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 RASA1P20936 1047 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 GRK4P32298 578 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 MCAMP43121 646 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 PHKA1P46020 1223 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 PTK7Q13308 1070 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 CUL4AQ13619 759 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 UBE4AQ14139 1066 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 SCARF1Q14162 830 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 UBE3CQ15386 1083 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 PUS10Q3MIT2 529 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 SLFNL1Q499Z3 407 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 CRTC2Q53ET0 693 aaPredicted RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 CAVIN4Q5BKX8 364 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 BLOC1S2Q6QNY1 142 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 CCDC129Q6ZRS4 1044 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 DEPDC4Q8N2C3 294 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 SUPT20HQ8NEM7 779 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 CLP1Q92989 425 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 TTC14Q96N46 770 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 SEC62Q99442 399 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 PRR14Q9BWN1 585 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 ALDH8A1Q9H2A2 487 aaPredicted RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 GPSM3Q9Y4H4 160 aa8.04□□□□□ -1.12
SLIRP-204ENST00000555890 TEP1Q99973 2627 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 MYO5AQ9Y4I1 1855 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 TCF20Q9UGU0 1960 aaKnown RBP8.04□□□□□ -1.12
SLIRP-204ENST00000555890 MAST3O60307 1309 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 DOCK2Q92608 1830 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 MYH13Q9UKX3 1938 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 SOWAHDA6NJG2 315 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 IGF2BP3O00425 579 aaKnown RBP eCLIP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 IDH1O75874 414 aaKnown RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 CYP2E1P05181 493 aaPredicted RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 HSPD1P10809 573 aaKnown RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 ADD2P35612 726 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 AK2P54819 239 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 RAB3GAP1Q15042 981 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 ADCK5Q3MIX3 580 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 SLC9C2Q5TAH2 1124 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 DMRTA1Q5VZB9 504 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 DPP8Q6V1X1 898 aaPredicted RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 DNAJC14Q6Y2X3 702 aaPredicted RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 NOL8Q76FK4 1167 aaKnown RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 CHAMP1Q96JM3 812 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 NEK1Q96PY6 1258 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 HNRNPABQ99729 332 aaKnown RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 NBPF3Q9H094 633 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 IRF2BPLQ9H1B7 796 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 GGA3Q9NZ52 723 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 MINPP1Q9UNW1 487 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 SCAF8Q9UPN6 1271 aaKnown RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.03□□□□□ -1.12
SLIRP-204ENST00000555890 LAMA4Q16363 1823 aa8.03□□□□□ -1.12
SLIRP-204ENST00000555890 RPAP1Q9BWH6 1393 aaPredicted RBP8.02□□□□□ -1.13
SLIRP-204ENST00000555890 ZNF646O15015 1829 aaPredicted RBP8.02□□□□□ -1.13
SLIRP-204ENST00000555890 GOLGA6L22H0YM25 854 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 M0R2C6 588 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 TLL1O43897 1013 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 BBOX1O75936 387 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 RPS6KB1P23443 525 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 MCM4P33991 863 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 KIF22Q14807 665 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 PTPRNQ16849 979 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 KIF4BQ2VIQ3 1234 aa8.02□□□□□ -1.13
SLIRP-204ENST00000555890 PRAMEF18Q5VWM3 479 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms