RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 HDLBPQ00341 1268 aaKnown RBP9.98□□□□□ -0.81
VPS29-203ENST00000546588 CUL4AQ13619 759 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 ADCK5Q3MIX3 580 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 STRIP1Q5VSL9 837 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 NAA16Q6N069 864 aaPredicted RBP9.98□□□□□ -0.81
VPS29-203ENST00000546588 OLFM4Q6UX06 510 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 RUFY3Q7L099 469 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 TAS1R3Q7RTX0 852 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 AIDAQ96BJ3 306 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 ZC3H12CQ9C0D7 883 aaKnown RBP9.98□□□□□ -0.81
VPS29-203ENST00000546588 PIM2Q9P1W9 311 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 IQSEC3Q9UPP2 1182 aaPredicted RBP9.98□□□□□ -0.81
VPS29-203ENST00000546588 MROH7-TTC4A0A0A0MT08 1334 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 MYH6P13533 1939 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 ANKRD33BA6NCL7 494 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 ESPNB1AK53 854 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 UPP2O95045 317 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 MBD4O95243 580 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 LDHBP07195 334 aaKnown RBP9.97□□□□□ -0.81
VPS29-203ENST00000546588 MMP14P50281 582 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 IFNL3Q8IZI9 196 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 LCORLQ8N3X6 602 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.97□□□□□ -0.81
VPS29-203ENST00000546588 INTS4Q96HW7 963 aaKnown RBP9.97□□□□□ -0.81
VPS29-203ENST00000546588 KCTD15Q96SI1 283 aaPredicted RBP9.97□□□□□ -0.81
VPS29-203ENST00000546588 ATP8A2Q9NTI2 1148 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 ABCF2Q9UG63 623 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 SEPT3Q9UH03 358 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 CDV3Q9UKY7 258 aaKnown RBP9.97□□□□□ -0.81
VPS29-203ENST00000546588 MYO3BQ8WXR4 1341 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 NID2Q14112 1375 aa9.97□□□□□ -0.81
VPS29-203ENST00000546588 LDHCP07864 332 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 CYP7A1P22680 504 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 RPS6KB1P23443 525 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 FSHRP23945 695 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 EXOSC10Q01780 885 aaKnown RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 IMMTQ16891 758 aaKnown RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 SBK1Q52WX2 424 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 MFSD14BQ5SR56 506 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 DACT2Q5SW24 774 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 HHIPL2Q6UWX4 724 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 STOX1Q6ZVD7 989 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 HSCBQ8IWL3 235 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 CERS5Q8N5B7 392 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 GPR161Q8N6U8 529 aaKnown RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 GIPC2Q8TF65 315 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 GTF3C2Q8WUA4 911 aaPredicted RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 GPR101Q96P66 508 aaPredicted RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 TSEN34Q9BSV6 310 aaKnown RBP9.96□□□□□ -0.82
VPS29-203ENST00000546588 RAI14Q9P0K7 980 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 TAF6LQ9Y6J9 622 aa9.96□□□□□ -0.82
VPS29-203ENST00000546588 A0A0G2JLW4 131 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 E7EWF7 191 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 ECE2O60344 883 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 FRAT2O75474 233 aaPredicted RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 CASTP20810 708 aaKnown RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 NEK4P51957 841 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 MTMR3Q13615 1198 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 GRIK5Q16478 980 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 NOM1Q5C9Z4 860 aaKnown RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 VASH1Q7L8A9 365 aaPredicted RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 DZIP1Q86YF9 867 aaKnown RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 MB21D2Q8IYB1 491 aaPredicted RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 STAG1Q8WVM7 1258 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 MRRFQ96E11 262 aaKnown RBP9.95□□□□□ -0.82
VPS29-203ENST00000546588 NEK1Q96PY6 1258 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 SPON1Q9HCB6 807 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 EGFL7Q9UHF1 273 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 BRPF3Q9ULD4 1205 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 CYP46A1Q9Y6A2 500 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 PAPPA2Q9BXP8 1791 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 ATAD5Q96QE3 1844 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 MYH4Q9Y623 1939 aa9.95□□□□□ -0.82
VPS29-203ENST00000546588 YDJCA8MPS7 323 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 C21orf2O43822 256 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 ICMTO60725 284 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 PTMSP20962 102 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 MAPK1P28482 360 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 SCTRP47872 440 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 RHBDL3P58872 404 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 TOB2Q14106 344 aaPredicted RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 ANKRD1Q15327 319 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 DALRD3Q5D0E6 543 aaKnown RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 TTLL5Q6EMB2 1281 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 BLOC1S2Q6QNY1 142 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 DHX32Q7L7V1 743 aaKnown RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 CCDC116Q8IYX3 515 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 ZDHHC15Q96MV8 337 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 JAKMIP1Q96N16 626 aaKnown RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 GMLQ99445 158 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 NACAP1Q9BZK3 213 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 ARMT1Q9H993 441 aa9.94□□□□□ -0.82
VPS29-203ENST00000546588 DCP1AQ9NPI6 582 aaPredicted RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 SH2B1Q9NRF2 756 aaPredicted RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 ARPP21Q9UBL0 812 aaPredicted RBP9.94□□□□□ -0.82
VPS29-203ENST00000546588 PLIN4Q96Q06 1357 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 NFKBIEO00221 500 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 ZNF213O14771 459 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 BAG3O95817 575 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 VIL1P09327 827 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms