RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HINFPQ9BQA5 517 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 AFF2P51816 1311 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 SMCO2A6NFE2 343 aa19.13■□□□□ 0.65
USP28-208ENST00000540438 SEC31AO94979 1220 aaKnown RBP19.13■□□□□ 0.65
USP28-208ENST00000540438 RAD51AP2Q09MP3 1159 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 NR1I3Q14994 352 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 CCDC178Q5BJE1 867 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 DTHD1Q6ZMT9 781 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 PPFIBP1Q86W92 1011 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 PCDHA4Q9UN74 947 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 SEMA3EO15041 775 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 KLK7P49862 253 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 KRT31Q15323 416 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 UBE2SQ16763 222 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 PDXDC2PQ6P474 469 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 DPP8Q6V1X1 898 aaPredicted RBP19.12■□□□□ 0.65
USP28-208ENST00000540438 DYMQ7RTS9 669 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 DBNDD1Q9H9R9 158 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 DDX4Q9NQI0 724 aaKnown RBP19.12■□□□□ 0.65
USP28-208ENST00000540438 RNF216Q9NWF9 866 aaPredicted RBP19.12■□□□□ 0.65
USP28-208ENST00000540438 PUF60Q9UHX1 559 aaKnown RBP19.12■□□□□ 0.65
USP28-208ENST00000540438 FLT1P17948 1338 aa19.12■□□□□ 0.65
USP28-208ENST00000540438 E2F4Q16254 413 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 TEX35Q5T0J7 233 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 SPATA1Q5VX52 437 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 ZFPM1Q8IX07 1006 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 TBC1D16Q8TBP0 767 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 FERMT2Q96AC1 680 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 NUP88Q99567 741 aaPredicted RBP19.11■□□□□ 0.65
USP28-208ENST00000540438 TRIM10Q9UDY6 481 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 RPN1P04843 607 aaKnown RBP19.11■□□□□ 0.65
USP28-208ENST00000540438 FCER1AP12319 257 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 AKR1B1P15121 316 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 TXNRD1Q16881 649 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 RC3H1Q5TC82 1133 aaKnown RBP19.11■□□□□ 0.65
USP28-208ENST00000540438 NT5DC1Q5TFE4 455 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 KCTD1Q719H9 257 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 APTXQ7Z2E3 356 aaKnown RBP19.11■□□□□ 0.65
USP28-208ENST00000540438 AHDC1Q5TGY3 1603 aaPredicted RBP19.11■□□□□ 0.65
USP28-208ENST00000540438 ARAP2Q8WZ64 1704 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 NAALADL2Q58DX5 795 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 MNS1Q8NEH6 495 aa19.11■□□□□ 0.65
USP28-208ENST00000540438 IRS2Q9Y4H2 1338 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 STXBP3O00186 592 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 SBK1Q52WX2 424 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 CCDC12Q8WUD4 166 aaPredicted RBP19.1■□□□□ 0.65
USP28-208ENST00000540438 DACH1Q9UI36 760 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.1■□□□□ 0.65
USP28-208ENST00000540438 G3V3G9 751 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 DCAF8Q5TAQ9 597 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 KANK3Q6NY19 840 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 SH3RF1Q7Z6J0 888 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 C4orf32Q8N8J7 132 aa19.1■□□□□ 0.65
USP28-208ENST00000540438 AKR1B15C9JRZ8 316 aaPredicted RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 PARP1P09874 1014 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 RBM5P52756 815 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP28-208ENST00000540438 NFIAQ12857 509 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 POTEDQ86YR6 584 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 SPATA20Q8TB22 786 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 NID2Q14112 1375 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 PLCG1P19174 1290 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 UBXN1Q04323 297 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 KIAA0825Q8IV33 1275 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 TBCKQ8TEA7 893 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 CHP1Q99653 195 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 SLF1Q9BQI6 1058 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 ADD3Q9UEY8 706 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 TTF2Q9UNY4 1162 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 SCAF8Q9UPN6 1271 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 NRAPQ86VF7 1730 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 TNRC6CQ9HCJ0 1690 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 POTEMA6NI47 508 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 GYPCP04921 128 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 CACNB1Q02641 598 aaPredicted RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 TBX2Q13207 712 aaPredicted RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 GRM4Q14833 912 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 CERS5Q8N5B7 392 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 ZNF622Q969S3 477 aaKnown RBP eCLIP19.09■□□□□ 0.656e-7■■■■■ 27
USP28-208ENST00000540438 SRRTQ9BXP5 876 aaKnown RBP19.09■□□□□ 0.65
USP28-208ENST00000540438 LEMD3Q9Y2U8 911 aa19.09■□□□□ 0.65
USP28-208ENST00000540438 TIAM2Q8IVF5 1701 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 PSDA5PKW4 1024 aaPredicted RBP19.08■□□□□ 0.65
USP28-208ENST00000540438 TULP1O00294 542 aaPredicted RBP19.08■□□□□ 0.65
USP28-208ENST00000540438 TDP2O95551 362 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 HSPA1LP34931 641 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 TNNI2P48788 182 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 ST5P78524 1137 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 DGKHQ86XP1 1220 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 ZFP91Q96JP5 570 aaPredicted RBP19.08■□□□□ 0.65
USP28-208ENST00000540438 KANSL2Q9H9L4 492 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 ZNF446Q9NWS9 450 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 DAGLAQ9Y4D2 1042 aa19.08■□□□□ 0.65
USP28-208ENST00000540438 A0A1B0GTH6 734 aa19.08■□□□□ 0.64
USP28-208ENST00000540438 SSBP05455 408 aaKnown RBP eCLIP19.08■□□□□ 0.64
USP28-208ENST00000540438 RHBDL3P58872 404 aa19.08■□□□□ 0.64
USP28-208ENST00000540438 PPP2R5BQ15173 497 aa19.08■□□□□ 0.64
USP28-208ENST00000540438 FNBP4Q8N3X1 1017 aaPredicted RBP19.08■□□□□ 0.64
USP28-208ENST00000540438 SLC39A2Q9NP94 309 aa19.08■□□□□ 0.64
USP28-208ENST00000540438 KCNJ18B7U540 433 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 ARHGAP6O43182 974 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms