RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PBXIP1Q96AQ6 731 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 CRBNQ96SW2 442 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 CDH23Q9H251 3354 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 PRRC2BQ5JSZ5 2229 aaKnown RBP11.24□□□□□ -0.61
USP28-205ENST00000537706 CACNA1FO60840 1977 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 LPXNO60711 386 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 ZP2Q05996 745 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 PTPROQ16827 1216 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 NBPF20Q3BBV1 942 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 TATDN1Q6P1N9 297 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 SPATA5Q8NB90 893 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 SCLYQ96I15 445 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 FTOQ9C0B1 505 aaKnown RBP eCLIP11.24□□□□□ -0.61
USP28-205ENST00000537706 WNT8AQ9H1J5 351 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 FANCIQ9NVI1 1328 aa11.24□□□□□ -0.61
USP28-205ENST00000537706 NOL8Q76FK4 1167 aaKnown RBP11.23□□□□□ -0.61
USP28-205ENST00000537706 TTC6Q86TZ1 520 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 RIOX2Q8IUF8 465 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 SLC43A3Q8NBI5 491 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 ATG4CQ96DT6 458 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 DDX11Q96FC9 970 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 SH2D4AQ9H788 454 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 FAM86C1Q9NVL1 165 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 SERPINB13Q9UIV8 391 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 GBF1Q92538 1859 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 ZNF316A6NFI3 1004 aaPredicted RBP11.23□□□□□ -0.61
USP28-205ENST00000537706 C19orf67A6NJJ6 358 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 BAIAP3O94812 1187 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 PPP4CP60510 307 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 TCF15Q12870 199 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 ACVR2BQ13705 512 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 HERC4Q5GLZ8 1057 aaPredicted RBP11.23□□□□□ -0.61
USP28-205ENST00000537706 EP400NLQ6ZTU2 488 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 CERS3Q8IU89 383 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 WWC1Q8IX03 1113 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 RETREG2Q8NC44 543 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 ZNF384Q8TF68 577 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 EDAQ92838 391 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 TGS1Q96RS0 853 aaKnown RBP11.23□□□□□ -0.61
USP28-205ENST00000537706 EHD4Q9H223 541 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 HDAC5Q9UQL6 1122 aa11.23□□□□□ -0.61
USP28-205ENST00000537706 TMEM221A6NGB7 291 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 M0R296 226 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 USP5P45974 858 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 EXOSC9Q06265 439 aaKnown RBP11.22□□□□□ -0.61
USP28-205ENST00000537706 TIGD5Q53EQ6 642 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 IER5LQ5T953 404 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 NEK9Q8TD19 979 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 ANKS1AQ92625 1134 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 XAGE2Q96GT9 111 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 AP5M1Q9H0R1 490 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 ABHD16BQ9H3Z7 469 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 HMG20BQ9P0W2 317 aa11.22□□□□□ -0.61
USP28-205ENST00000537706 B4GALT4O60513 344 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 IGSF3O75054 1194 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 SNAI1O95863 264 aaPredicted RBP11.21□□□□□ -0.61
USP28-205ENST00000537706 STAT3P40763 770 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 MAMDC4Q6UXC1 1216 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 TBC1D9Q6ZT07 1266 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 ZNF467Q7Z7K2 595 aaPredicted RBP11.21□□□□□ -0.61
USP28-205ENST00000537706 AGBL1Q96MI9 1066 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 TRPV6Q9H1D0 765 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 MUTYHQ9UIF7 546 aa11.21□□□□□ -0.61
USP28-205ENST00000537706 H3BQ06 376 aaPredicted RBP11.21□□□□□ -0.62
USP28-205ENST00000537706 MPHOSPH10O00566 681 aaKnown RBP11.21□□□□□ -0.62
USP28-205ENST00000537706 IRS1P35568 1242 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 TIMM10P62072 90 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 TMEM132BQ14DG7 1078 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 CXCL17Q6UXB2 119 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 FBXL6Q8N531 539 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 NEUROD6Q96NK8 337 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 ARHGEF10LQ9HCE6 1279 aa11.21□□□□□ -0.62
USP28-205ENST00000537706 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.21□□□□□ -0.62
USP28-205ENST00000537706 TNKSO95271 1327 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 A0A1B0GUL7 405 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 NCK2O43639 380 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 UQCRFS1P1P0C7P4 283 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 NUBP1P53384 320 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 CCDC144BQ3MJ40 725 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 TRIM67Q6ZTA4 783 aa11.2□□□□□ -0.62
USP28-205ENST00000537706 PROB1E7EW31 1015 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 WDR46O15213 610 aaKnown RBP11.19□□□□□ -0.62
USP28-205ENST00000537706 ARHGEF15O94989 841 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 ERVK-21P61565 698 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 NKX3-2P78367 333 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 BEX3Q00994 111 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 SEPT2Q15019 361 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 MAGEB6Q8N7X4 407 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 SUGCTQ9HAC7 445 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 MTUS1Q9ULD2 1270 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 TRPC6Q9Y210 931 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 RGS20O76081 388 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 RNF135Q8IUD6 432 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 FBXO22Q8NEZ5 403 aa11.19□□□□□ -0.62
USP28-205ENST00000537706 PABPC5Q96DU9 382 aaKnown RBP11.19□□□□□ -0.62
USP28-205ENST00000537706 CTDP1Q9Y5B0 961 aaPredicted RBP11.19□□□□□ -0.62
USP28-205ENST00000537706 KRT37O76014 449 aa11.18□□□□□ -0.62
USP28-205ENST00000537706 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
USP28-205ENST00000537706 TNFAIP2Q03169 654 aa11.18□□□□□ -0.62
USP28-205ENST00000537706 BFSP2Q13515 415 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms