RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 NUP88Q99567 741 aaPredicted RBP15.6■□□□□ 0.09
RTN3-207ENST00000536011 PRKAG2Q9UGJ0 569 aa15.6■□□□□ 0.09
RTN3-207ENST00000536011 FEM1BQ9UK73 627 aa15.6■□□□□ 0.09
RTN3-207ENST00000536011 MYH4Q9Y623 1939 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 ATP2A1O14983 1001 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 FDX1P10109 184 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 MSL3Q8N5Y2 521 aaKnown RBP15.59■□□□□ 0.09
RTN3-207ENST00000536011 REPS2Q8NFH8 660 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 NEDD1Q8NHV4 660 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 SEC62Q99442 399 aaKnown RBP15.59■□□□□ 0.09
RTN3-207ENST00000536011 TINF2Q9BSI4 451 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 UBE2OQ9C0C9 1292 aaKnown RBP15.59■□□□□ 0.09
RTN3-207ENST00000536011 CNPY2Q9Y2B0 182 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 SALL3Q9BXA9 1300 aa15.59■□□□□ 0.09
RTN3-207ENST00000536011 PGK2P07205 417 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 RARBP10826 455 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 OAZ1P54368 228 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 ZNF792Q3KQV3 632 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 TDHQ8IZJ6 230 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 KIFC2Q96AC6 838 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 DDX11Q96FC9 970 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 LBHD1Q9BQE6 289 aaPredicted RBP15.58■□□□□ 0.08
RTN3-207ENST00000536011 FBXO40Q9UH90 709 aa15.58■□□□□ 0.08
RTN3-207ENST00000536011 ISY1Q9ULR0 285 aaKnown RBP15.58■□□□□ 0.08
RTN3-207ENST00000536011 BMP3P12645 472 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 TFAP4Q01664 338 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 GJC2Q5T442 439 aaPredicted RBP15.57■□□□□ 0.08
RTN3-207ENST00000536011 SLFN13Q68D06 897 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 GPR153Q6NV75 609 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 LRRC47Q8N1G4 583 aaKnown RBP15.57■□□□□ 0.08
RTN3-207ENST00000536011 SLC38A10Q9HBR0 1119 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 HELLSQ9NRZ9 838 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 PLXNA1Q9UIW2 1896 aa15.57■□□□□ 0.08
RTN3-207ENST00000536011 ZNFX1Q9P2E3 1918 aaKnown RBP15.56■□□□□ 0.08
RTN3-207ENST00000536011 TSPY2A6NKD2 308 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 AKR1A1P14550 325 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 STAT2P52630 851 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 ATN1P54259 1190 aaPredicted RBP15.56■□□□□ 0.08
RTN3-207ENST00000536011 PDE1AP54750 535 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 RTP1P59025 263 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 IKQ13123 557 aaPredicted RBP15.56■□□□□ 0.08
RTN3-207ENST00000536011 FAM47AQ5JRC9 791 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 PRAMEF19Q5SWL8 479 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 ANO1Q5XXA6 986 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 RNF180Q86T96 592 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 FAM160B2Q86V87 743 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 CPXCR1Q8N123 301 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 CHURC1Q8WUH1 139 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 GMCL1Q96IK5 515 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 XPNPEP3Q9NQH7 507 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 SYNGAP1Q96PV0 1343 aa15.56■□□□□ 0.08
RTN3-207ENST00000536011 SLC1A4P43007 532 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 LRRC41Q15345 812 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 LRIT3Q3SXY7 679 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.55■□□□□ 0.08
RTN3-207ENST00000536011 ZNF467Q7Z7K2 595 aaPredicted RBP15.55■□□□□ 0.08
RTN3-207ENST00000536011 ANKRD35Q8N283 1001 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 CHST13Q8NET6 341 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 ANAPC4Q9UJX5 808 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 STX8Q9UNK0 236 aa15.55■□□□□ 0.08
RTN3-207ENST00000536011 SLC4A3P48751 1232 aa15.54■□□□□ 0.08
RTN3-207ENST00000536011 MFAP1P55081 439 aaKnown RBP15.54■□□□□ 0.08
RTN3-207ENST00000536011 ALX1Q15699 326 aa15.54■□□□□ 0.08
RTN3-207ENST00000536011 SLC39A5Q6ZMH5 540 aa15.54■□□□□ 0.08
RTN3-207ENST00000536011 CCDC129Q6ZRS4 1044 aa15.54■□□□□ 0.08
RTN3-207ENST00000536011 RWDD1Q9H446 243 aaPredicted RBP15.54■□□□□ 0.08
RTN3-207ENST00000536011 ATP11BQ9Y2G3 1177 aa15.54■□□□□ 0.08
RTN3-207ENST00000536011 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.54■□□□□ 0.08
RTN3-207ENST00000536011 DNAJC25-GNG10A0A024R161 153 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 TMEM232C9JQI7 657 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 ORC4O43929 436 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 RANBP6O60518 1105 aaKnown RBP15.53■□□□□ 0.08
RTN3-207ENST00000536011 ADCYAP1R1P41586 468 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 MDM2Q00987 491 aaPredicted RBP15.53■□□□□ 0.08
RTN3-207ENST00000536011 SNX17Q15036 470 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 MCMDC2Q4G0Z9 681 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 C1orf53Q5VUE5 145 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 MAMDC4Q6UXC1 1216 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 YTHDC1Q96MU7 727 aaKnown RBP15.53■□□□□ 0.08
RTN3-207ENST00000536011 RAVER2Q9HCJ3 691 aaKnown RBP15.53■□□□□ 0.08
RTN3-207ENST00000536011 FAM184BQ9ULE4 1060 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 PHF24Q9UPV7 400 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 RIPK3Q9Y572 518 aa15.53■□□□□ 0.08
RTN3-207ENST00000536011 ZMYM6O95789 1325 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 TRIM6-TRIM34B2RNG4 842 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 SOX1O00570 391 aaPredicted RBP15.52■□□□□ 0.08
RTN3-207ENST00000536011 PLA2G6O60733 806 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 ZNF865P0CJ78 1059 aaPredicted RBP15.52■□□□□ 0.08
RTN3-207ENST00000536011 PCP11498 1178 aaKnown RBP15.52■□□□□ 0.08
RTN3-207ENST00000536011 CTDSPL2Q05D32 466 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 TKFCQ3LXA3 575 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 STAG1Q8WVM7 1258 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 LRCH3Q96II8 777 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 ACAD9Q9H845 621 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 TOMM22Q9NS69 142 aa15.52■□□□□ 0.08
RTN3-207ENST00000536011 FOXP2O15409 715 aa15.51■□□□□ 0.07
RTN3-207ENST00000536011 MCCP23508 829 aa15.51■□□□□ 0.07
RTN3-207ENST00000536011 RCSD1Q6JBY9 416 aa15.51■□□□□ 0.07
RTN3-207ENST00000536011 DCAF4Q8WV16 495 aa15.51■□□□□ 0.07
RTN3-207ENST00000536011 FERMT2Q96AC1 680 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms