RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 PPP2R3AQ06190 1150 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 PNOCQ13519 176 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 SCARF1Q14162 830 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NFIXQ14938 502 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NR1I3Q14994 352 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 HLFQ16534 295 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 RTN1Q16799 776 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 LONRF3Q496Y0 759 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 MSL1Q68DK7 614 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 OTUD7BQ6GQQ9 843 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 LDHAL6AQ6ZMR3 332 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NFXL1Q6ZNB6 911 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 CYB5R4Q7L1T6 521 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 MICU3Q86XE3 530 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 DIS3L2Q8IYB7 885 aaKnown RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 STK11IPQ8N1F8 1099 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 TC2NQ8N9U0 490 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 TTLL11Q8NHH1 800 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 KIFC2Q96AC6 838 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 SETDB2Q96T68 719 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 UTP14AQ9BVJ6 771 aaKnown RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NAPBQ9H115 298 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 ARFGAP3Q9NP61 516 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 FAM217BQ9NTX9 383 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 INTS13Q9NVM9 706 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 RBM28Q9NW13 759 aaKnown RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 FANCLQ9NW38 375 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 ANAPC4Q9UJX5 808 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 MAN1B1Q9UKM7 699 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 PNMA3Q9UL41 463 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NIP7Q9Y221 180 aaKnown RBP eCLIP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 NFE2L3Q9Y4A8 694 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF532Q9HCE3 1301 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 NRXN2Q9P2S2 1712 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 CACNA1SQ13698 1873 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 B4E1Z4 1266 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 AKR1B15C9JRZ8 316 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 POLRMTO00411 1230 aaKnown RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 IFIT3O14879 490 aaKnown RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 ACTN4O43707 911 aaKnown RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 RNF40O75150 1001 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 ERLIN1O75477 346 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 EIF3JO75822 258 aaKnown RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 URI1O94763 535 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 MYL1P05976 194 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 MCM3P25205 808 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 TXLNAP40222 546 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 PBX1P40424 430 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 APLP1P51693 650 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 WTAPQ15007 396 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 FILIP1LQ4L180 1135 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 CDKAL1Q5VV42 579 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 SPATA1Q5VX52 437 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 TBC1D9BQ66K14 1250 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 CC2D1AQ6P1N0 951 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 MFSD6Q6ZSS7 791 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 SH3RF1Q7Z6J0 888 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 NLRP10Q86W26 655 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF34Q8IZ26 560 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 IFNL3Q8IZI9 196 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 MSANTD4Q8NCY6 345 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 NKX2-3Q8TAU0 364 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 ERCC4Q92889 916 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-233ENST00000535896 EXOC4Q96A65 974 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 TMUB1Q9BVT8 246 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 NYXQ9GZU5 481 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 BRMS1Q9HCU9 246 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 CNNM1Q9NRU3 951 aa7.18□□□□□ -1.26
SYNE1-233ENST00000535896 SYNRGQ9UMZ2 1314 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 C10orf71Q711Q0 1435 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 A0A087WWV3 80 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 TRIM75PA6NK02 468 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 SPDYE16A6NNV3 312 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 KIF5CO60282 957 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 IDH1O75874 414 aaKnown RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 SERPINB2P05120 415 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CDK11BP21127 795 aaKnown RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 BMP6P22004 513 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 HOXA7P31268 230 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 PLA2G4AP47712 749 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 GNG11P61952 73 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 DDR1Q08345 913 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 WHAMMP3Q1A5X7 153 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 TPTE2Q6XPS3 522 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF662Q6ZS27 426 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 RASGRP2Q7LDG7 609 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 SRGAP1Q7Z6B7 1085 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 PPFIBP1Q86W92 1011 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 NBPF5PQ86XG9 351 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 TMTC1Q8IUR5 882 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CRACR2BQ8N4Y2 399 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CNBD1Q8NA66 436 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 SPATA5Q8NB90 893 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 ANKRD20A12PQ8NF67 263 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 DPF2Q92785 391 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF775Q96BV0 537 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 IQCDQ96DY2 449 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 RPGRIP1Q96KN7 1286 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CARD6Q9BX69 1037 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 SLC26A6Q9BXS9 759 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms