RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 KBTBD13C9JR72 458 aa12□□□□□ -0.49
VPS28-204ENST00000526054 FOXP2O15409 715 aa12□□□□□ -0.49
VPS28-204ENST00000526054 SEPT4O43236 478 aa12□□□□□ -0.49
VPS28-204ENST00000526054 COBLO75128 1261 aa12□□□□□ -0.49
VPS28-204ENST00000526054 CDC45O75419 566 aa12□□□□□ -0.49
VPS28-204ENST00000526054 MYCNP04198 464 aaPredicted RBP12□□□□□ -0.49
VPS28-204ENST00000526054 FCER1AP12319 257 aa12□□□□□ -0.49
VPS28-204ENST00000526054 PPARAQ07869 468 aa12□□□□□ -0.49
VPS28-204ENST00000526054 GJC2Q5T442 439 aaPredicted RBP12□□□□□ -0.49
VPS28-204ENST00000526054 ANO1Q5XXA6 986 aa12□□□□□ -0.49
VPS28-204ENST00000526054 DEFB123Q8N688 67 aa12□□□□□ -0.49
VPS28-204ENST00000526054 ARRDC4Q8NCT1 418 aa12□□□□□ -0.49
VPS28-204ENST00000526054 MAML3Q96JK9 1138 aa12□□□□□ -0.49
VPS28-204ENST00000526054 LBHD1Q9BQE6 289 aaPredicted RBP12□□□□□ -0.49
VPS28-204ENST00000526054 PRKAG2Q9UGJ0 569 aa12□□□□□ -0.49
VPS28-204ENST00000526054 SGSM2O43147 1006 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 SLC25A27O95847 323 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 RTP1P59025 263 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 PDE4BQ07343 736 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 TMEM132BQ14DG7 1078 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 FAM83BQ5T0W9 1011 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 Q7L0L9 218 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 MMP19Q99542 508 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 DSCC1Q9BVC3 393 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 MKNK2Q9HBH9 465 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 FBXO28Q9NVF7 368 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 PPP1R9AQ9ULJ8 1098 aa11.99□□□□□ -0.49
VPS28-204ENST00000526054 FGAP02671 866 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 COPB2P35606 906 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 KCTD2Q14681 263 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 FAM47AQ5JRC9 791 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 PRAMEF19Q5SWL8 479 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 KIAA1211Q6ZU35 1233 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 RIOX2Q8IUF8 465 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 STK11IPQ8N1F8 1099 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 SLC17A8Q8NDX2 589 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 ESYT1Q9BSJ8 1104 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 IL25Q9H293 177 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 CTNNA3Q9UI47 895 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 ADAMTS5Q9UNA0 930 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 ATP11BQ9Y2G3 1177 aa11.98□□□□□ -0.49
VPS28-204ENST00000526054 VWA5AO00534 786 aa11.97□□□□□ -0.49
VPS28-204ENST00000526054 PGK2P07205 417 aa11.97□□□□□ -0.49
VPS28-204ENST00000526054 RASA1P20936 1047 aa11.97□□□□□ -0.49
VPS28-204ENST00000526054 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.97□□□□□ -0.49
VPS28-204ENST00000526054 PRDM5Q9NQX1 630 aaPredicted RBP11.97□□□□□ -0.49
VPS28-204ENST00000526054 NRBP1Q9UHY1 535 aa11.97□□□□□ -0.49
VPS28-204ENST00000526054 ANAPC4Q9UJX5 808 aa11.97□□□□□ -0.49
VPS28-204ENST00000526054 ZNF214Q9UL59 606 aaPredicted RBP11.97□□□□□ -0.49
VPS28-204ENST00000526054 ZNF213O14771 459 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 RARBP10826 455 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 PCP11498 1178 aaKnown RBP11.96□□□□□ -0.49
VPS28-204ENST00000526054 STAT3P40763 770 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 LRRC41Q15345 812 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 IMMTQ16891 758 aaKnown RBP11.96□□□□□ -0.49
VPS28-204ENST00000526054 TRIM60Q495X7 471 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 SLC39A5Q6ZMH5 540 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 ZNF444Q8N0Y2 327 aaPredicted RBP11.96□□□□□ -0.49
VPS28-204ENST00000526054 NUP88Q99567 741 aaPredicted RBP11.96□□□□□ -0.49
VPS28-204ENST00000526054 SLF1Q9BQI6 1058 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 TEX13BQ9BXU2 312 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 RNF41Q9H4P4 317 aaPredicted RBP11.96□□□□□ -0.49
VPS28-204ENST00000526054 XPNPEP3Q9NQH7 507 aa11.96□□□□□ -0.49
VPS28-204ENST00000526054 CUL9Q8IWT3 2517 aa11.96□□□□□ -0.5
VPS28-204ENST00000526054 SMCHD1A6NHR9 2005 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 PRDM1O75626 825 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 NDUFB10O96000 172 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 ADCYAP1R1P41586 468 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 HAND2P61296 217 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 CTDSPL2Q05D32 466 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 SNX17Q15036 470 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 ZNF792Q3KQV3 632 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 SNRNP48Q6IEG0 339 aaKnown RBP11.95□□□□□ -0.5
VPS28-204ENST00000526054 REPS2Q8NFH8 660 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 FERMT2Q96AC1 680 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 TINF2Q9BSI4 451 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 TOMM22Q9NS69 142 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 NYAP2Q9P242 653 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 CNPY2Q9Y2B0 182 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 STXBP5LQ9Y2K9 1186 aa11.95□□□□□ -0.5
VPS28-204ENST00000526054 DIS3Q9Y2L1 958 aaKnown RBP11.95□□□□□ -0.5
VPS28-204ENST00000526054 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.95□□□□□ -0.51e-7■■■■□ 24.2
VPS28-204ENST00000526054 U3KPZ7 1027 aaPredicted RBP11.95□□□□□ -0.5
VPS28-204ENST00000526054 PLIN4Q96Q06 1357 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 F5H6K3 240 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 ORC4O43929 436 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 TSPY3P0CV98 308 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 TSPY8P0CW00 308 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 AKR1A1P14550 325 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 NT5C2P49902 561 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 PTH1RQ03431 593 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 KLRC3Q07444 240 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 AKNAD1Q5T1N1 836 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 MFSD6Q6ZSS7 791 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 RNF180Q86T96 592 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 STAG1Q8WVM7 1258 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 ANO2Q9NQ90 1003 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 PDLIM7Q9NR12 457 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 MTMR10Q9NXD2 777 aa11.94□□□□□ -0.5
VPS28-204ENST00000526054 PHF24Q9UPV7 400 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms