RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZMYND10O75800 440 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 BTDP43251 543 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 CYP4A11Q02928 519 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 PPFIA1Q13136 1202 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 KRT71Q3SY84 523 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 CERS3Q8IU89 383 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 KIAA0825Q8IV33 1275 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 PDLIM2Q96JY6 352 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 NT5C3AQ9H0P0 336 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 ATG3Q9NT62 314 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 ARMCX3Q9UH62 379 aaPredicted RBP14.04□□□□□ -0.16
USP53-209ENST00000514665 UTP11Q9Y3A2 253 aaKnown RBP14.04□□□□□ -0.16
USP53-209ENST00000514665 CEP83Q9Y592 693 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 ZNF804BA4D1E1 1349 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 DDAH1O94760 285 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 CYP2J2P51589 502 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 POLR2FP61218 127 aaKnown RBP14.03□□□□□ -0.16
USP53-209ENST00000514665 U2AF1L4Q8WU68 220 aaKnown RBP14.03□□□□□ -0.16
USP53-209ENST00000514665 PIGBQ92521 554 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 ATP8A2Q9NTI2 1148 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 ASIC3Q9UHC3 531 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 WDR17Q8IZU2 1322 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 KCNK3O14649 394 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 XRCC5P13010 732 aaKnown RBP14.03□□□□□ -0.16
USP53-209ENST00000514665 INPP5BP32019 993 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 SMTNP53814 917 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 NAA30Q147X3 362 aaPredicted RBP14.03□□□□□ -0.16
USP53-209ENST00000514665 FAM26FQ5R3K3 315 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 PDE11AQ9HCR9 933 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 MYO1AQ9UBC5 1043 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 TET3O43151 1660 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 CHGBP05060 677 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 LONP1P36776 959 aaKnown RBP14.03□□□□□ -0.16
USP53-209ENST00000514665 HLFQ16534 295 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 ACRBPQ8NEB7 543 aa14.03□□□□□ -0.16
USP53-209ENST00000514665 DOK7Q18PE1 504 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 WDR44Q5JSH3 913 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 ZNF365Q70YC5 407 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 CCDC63Q8NA47 563 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 RABGGTAQ92696 567 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 STRBPQ96SI9 672 aaKnown RBP14.02□□□□□ -0.16
USP53-209ENST00000514665 SOWAHDA6NJG2 315 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 CASP1P29466 404 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 ATP1A2P50993 1020 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 ADAT2Q7Z6V5 191 aaKnown RBP14.02□□□□□ -0.16
USP53-209ENST00000514665 FMNL3Q8IVF7 1028 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 CNOT6LQ96LI5 555 aaKnown RBP14.02□□□□□ -0.16
USP53-209ENST00000514665 SH2D4AQ9H788 454 aa14.02□□□□□ -0.16
USP53-209ENST00000514665 STAT1P42224 750 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 IRX5P78411 483 aaPredicted RBP14.02□□□□□ -0.17
USP53-209ENST00000514665 FAM182BQ5T319 152 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 B4GALNT4Q76KP1 1039 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 CABS1Q96KC9 395 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 RPGRIP1Q96KN7 1286 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 FERMT1Q9BQL6 677 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 NKIRAS1Q9NYS0 192 aa14.02□□□□□ -0.17
USP53-209ENST00000514665 ADCY10Q96PN6 1610 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 LIFRP42702 1097 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 LRRC41Q15345 812 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 UAP1Q16222 522 aaPredicted RBP14.01□□□□□ -0.17
USP53-209ENST00000514665 C6orf163Q5TEZ5 329 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 CLEC17AQ6ZS10 378 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 SRGAP1Q7Z6B7 1085 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 TTC16Q8NEE8 873 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 ENOX1Q8TC92 643 aaKnown RBP14.01□□□□□ -0.17
USP53-209ENST00000514665 KIFC2Q96AC6 838 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 USTQ9Y2C2 406 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 RUFY4Q6ZNE9 571 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 UBL4BQ8N7F7 174 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 GJA10Q969M2 543 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 SPTLC3Q9NUV7 552 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.01□□□□□ -0.17
USP53-209ENST00000514665 LRRC7Q96NW7 1537 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 GAS7O60861 476 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 CCDC144BQ3MJ40 725 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 VSTM4Q8IW00 320 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 CCDC105Q8IYK2 499 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 KIFAP3Q92845 792 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 TEKT1Q969V4 418 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 GOLPH3LQ9H4A5 285 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 HYOU1Q9Y4L1 999 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 CYP2E1P05181 493 aaPredicted RBP14.01□□□□□ -0.17
USP53-209ENST00000514665 USP17L8P0C7I0 530 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 DIXDC1Q155Q3 683 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 PSMD1Q99460 953 aa14.01□□□□□ -0.17
USP53-209ENST00000514665 NUCKS1Q9H1E3 243 aaKnown RBP14.01□□□□□ -0.17
USP53-209ENST00000514665 ZCCHC11Q5TAX3 1644 aaKnown RBP14□□□□□ -0.17
USP53-209ENST00000514665 ADAM9Q13443 819 aa14□□□□□ -0.17
USP53-209ENST00000514665 LONRF2Q1L5Z9 754 aa14□□□□□ -0.17
USP53-209ENST00000514665 TBC1D10CQ8IV04 446 aa14□□□□□ -0.17
USP53-209ENST00000514665 DYNLL2Q96FJ2 89 aa14□□□□□ -0.17
USP53-209ENST00000514665 PPANQ9NQ55 473 aaKnown RBP14□□□□□ -0.17
USP53-209ENST00000514665 PANK4Q9NVE7 773 aa14□□□□□ -0.17
USP53-209ENST00000514665 PCDHA1Q9Y5I3 950 aa14□□□□□ -0.17
USP53-209ENST00000514665 CYP27A1Q02318 531 aa14□□□□□ -0.17
USP53-209ENST00000514665 EHHADHQ08426 723 aa14□□□□□ -0.17
USP53-209ENST00000514665 TRAF3IP1Q8TDR0 691 aaPredicted RBP14□□□□□ -0.17
USP53-209ENST00000514665 MPHOSPH6Q99547 160 aaKnown RBP14□□□□□ -0.17
USP53-209ENST00000514665 TCP1P17987 556 aaKnown RBP14□□□□□ -0.17
USP53-209ENST00000514665 ERFEQ4G0M1 354 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms