RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 CPXCR1Q8N123 301 aa14.86□□□□□ -0.03
PDPN-208ENST00000509009 LRRC47Q8N1G4 583 aaKnown RBP14.86□□□□□ -0.03
PDPN-208ENST00000509009 KIFC2Q96AC6 838 aa14.86□□□□□ -0.03
PDPN-208ENST00000509009 YTHDC1Q96MU7 727 aaKnown RBP14.86□□□□□ -0.03
PDPN-208ENST00000509009 SLC38A10Q9HBR0 1119 aa14.86□□□□□ -0.03
PDPN-208ENST00000509009 HELLSQ9NRZ9 838 aa14.86□□□□□ -0.03
PDPN-208ENST00000509009 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.86□□□□□ -0.03
PDPN-208ENST00000509009 TACC3Q9Y6A5 838 aa14.86□□□□□ -0.03
PDPN-208ENST00000509009 GREB1LQ9C091 1923 aaPredicted RBP14.86□□□□□ -0.03
PDPN-208ENST00000509009 ZNFX1Q9P2E3 1918 aaKnown RBP14.86□□□□□ -0.03
PDPN-208ENST00000509009 ZNF236Q9UL36 1845 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 DNAJC25-GNG10A0A024R161 153 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 BMP3P12645 472 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 SLC4A3P48751 1232 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 LRRC41Q15345 812 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 SLC39A5Q6ZMH5 540 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 TICAM2Q86XR7 235 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 DDX11Q96FC9 970 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 RAVER2Q9HCJ3 691 aaKnown RBP14.85□□□□□ -0.03
PDPN-208ENST00000509009 IL17RBQ9NRM6 502 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 ANAPC4Q9UJX5 808 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 CTDP1Q9Y5B0 961 aaPredicted RBP14.85□□□□□ -0.03
PDPN-208ENST00000509009 PARP14Q460N5 1801 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 PLIN4Q96Q06 1357 aa14.85□□□□□ -0.03
PDPN-208ENST00000509009 SMCHD1A6NHR9 2005 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 TMEM232C9JQI7 657 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 KBTBD13C9JR72 458 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 MYCNP04198 464 aaPredicted RBP14.84□□□□□ -0.03
PDPN-208ENST00000509009 ZNF865P0CJ78 1059 aaPredicted RBP14.84□□□□□ -0.03
PDPN-208ENST00000509009 ADCYAP1R1P41586 468 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 SMC5Q8IY18 1101 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 LRCH3Q96II8 777 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 FAM227BQ96M60 508 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 UBE2OQ9C0C9 1292 aaKnown RBP14.84□□□□□ -0.03
PDPN-208ENST00000509009 LNPKQ9C0E8 428 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 RWDD1Q9H446 243 aaPredicted RBP14.84□□□□□ -0.03
PDPN-208ENST00000509009 LAMA3Q16787 3333 aa14.84□□□□□ -0.03
PDPN-208ENST00000509009 SNAI1O95863 264 aaPredicted RBP14.83□□□□□ -0.04
PDPN-208ENST00000509009 FGAP02671 866 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 FGRP09769 529 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 FDX1P10109 184 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 MCCP23508 829 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 RTP1P59025 263 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 MDM2Q00987 491 aaPredicted RBP14.83□□□□□ -0.04
PDPN-208ENST00000509009 MCMDC2Q4G0Z9 681 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 PPP4R3BQ5MIZ7 849 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 MAMDC4Q6UXC1 1216 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.83□□□□□ -0.04
PDPN-208ENST00000509009 MSL3Q8N5Y2 521 aaKnown RBP14.83□□□□□ -0.04
PDPN-208ENST00000509009 CHURC1Q8WUH1 139 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 STAG1Q8WVM7 1258 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 GMCL1Q96IK5 515 aa14.83□□□□□ -0.04
PDPN-208ENST00000509009 COL11A1P12107 1806 aaPredicted RBP14.82□□□□□ -0.04
PDPN-208ENST00000509009 A0A0D9SFI3 127 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 TSPY2A6NKD2 308 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 ORC4O43929 436 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 RANBP6O60518 1105 aaKnown RBP14.82□□□□□ -0.04
PDPN-208ENST00000509009 NMT2O60551 498 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 PLA2G6O60733 806 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 IGHDP01880 384 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 RARBP10826 455 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 NOVP48745 357 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 OAZ1P54368 228 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 LRIT3Q3SXY7 679 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 RCSD1Q6JBY9 416 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 B4GALNT3Q6L9W6 998 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 TDHQ8IZJ6 230 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 CHST13Q8NET6 341 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 FERMT2Q96AC1 680 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 CHMP4CQ96CF2 233 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 XPNPEP3Q9NQH7 507 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 FBXO40Q9UH90 709 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 STX8Q9UNK0 236 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 ATP11BQ9Y2G3 1177 aa14.82□□□□□ -0.04
PDPN-208ENST00000509009 PGK1P00558 417 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 SLC1A4P43007 532 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 SNX17Q15036 470 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 ZNF467Q7Z7K2 595 aaPredicted RBP14.81□□□□□ -0.04
PDPN-208ENST00000509009 FAM160B2Q86V87 743 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 ANKRD35Q8N283 1001 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 PHF24Q9UPV7 400 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 CNPY2Q9Y2B0 182 aa14.81□□□□□ -0.04
PDPN-208ENST00000509009 TRIM6-TRIM34B2RNG4 842 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 HSPD1P10809 573 aaKnown RBP14.8□□□□□ -0.04
PDPN-208ENST00000509009 AKR1A1P14550 325 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 STAT2P52630 851 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 NMIQ13287 307 aaPredicted RBP14.8□□□□□ -0.04
PDPN-208ENST00000509009 C1orf53Q5VUE5 145 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 KCTD1Q719H9 257 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 RNF180Q86T96 592 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 CHD1LQ86WJ1 897 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 PLEKHM2Q8IWE5 1019 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 EXOC6Q8TAG9 804 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 FGD4Q96M96 766 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 AGBL1Q96MI9 1066 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 LBHD1Q9BQE6 289 aaPredicted RBP14.8□□□□□ -0.04
PDPN-208ENST00000509009 FAM184BQ9ULE4 1060 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 ISY1Q9ULR0 285 aaKnown RBP14.8□□□□□ -0.04
PDPN-208ENST00000509009 ZNF536O15090 1300 aa14.8□□□□□ -0.04
PDPN-208ENST00000509009 SYNGAP1Q96PV0 1343 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms