RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 CCDC174Q6PII3 467 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 TMEM57Q8N5G2 664 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 MSL3Q8N5Y2 521 aaKnown RBP11.37□□□□□ -0.59
NEDD9-211ENST00000508546 KLHDC9Q8NEP7 349 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 FRAT1Q92837 279 aaPredicted RBP11.37□□□□□ -0.59
NEDD9-211ENST00000508546 DCP1AQ9NPI6 582 aaPredicted RBP11.37□□□□□ -0.59
NEDD9-211ENST00000508546 STARD7Q9NQZ5 370 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 TBX21Q9UL17 535 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 CFAP54Q96N23 3096 aa11.37□□□□□ -0.59
NEDD9-211ENST00000508546 MROH7Q68CQ1 1323 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 PRR33A8MZF0 331 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 PGK2P07205 417 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 ICA1Q05084 483 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 PPIGQ13427 754 aaKnown RBP eCLIP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 KCTD2Q14681 263 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 SKIV2LQ15477 1246 aaKnown RBP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 CCSAPQ6IQ19 270 aaPredicted RBP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 SPICE1Q8N0Z3 855 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 CCDC17Q96LX7 622 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 NKX2-4Q9H2Z4 354 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 CD320Q9NPF0 282 aa11.36□□□□□ -0.59
NEDD9-211ENST00000508546 ZNF214Q9UL59 606 aaPredicted RBP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 YBX2Q9Y2T7 364 aaKnown RBP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 GREB1LQ9C091 1923 aaPredicted RBP11.36□□□□□ -0.59
NEDD9-211ENST00000508546 ELP1O95163 1332 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 SYNRGQ9UMZ2 1314 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 MYH4Q9Y623 1939 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 PI4K2BG5E9Z4 385 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 VWA5AO00534 786 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 TLL1O43897 1013 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 AKR1B1P15121 316 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 PDE6AP16499 860 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 CST5P28325 142 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-211ENST00000508546 STAT3P40763 770 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 CDK7P50613 346 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 TMEM240Q5SV17 173 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 SLC9C2Q5TAH2 1124 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 C16orf59Q7L2K0 433 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 CLEC10AQ8IUN9 316 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 REPS2Q8NFH8 660 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 SDR42E1Q8WUS8 393 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 LENG1Q96BZ8 264 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-211ENST00000508546 FAM184BQ9ULE4 1060 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 PPP1R9AQ9ULJ8 1098 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 CNPY2Q9Y2B0 182 aa11.35□□□□□ -0.59
NEDD9-211ENST00000508546 USP34Q70CQ2 3546 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 COL4A4P53420 1690 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-211ENST00000508546 TCRBV5S4A2TA0A5A2 114 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 DUSP11O75319 330 aaKnown RBP11.34□□□□□ -0.59
NEDD9-211ENST00000508546 CYP2D6P10635 497 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 KCNA10Q16322 511 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 ZKSCAN2Q63HK3 967 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 SAMD1Q6SPF0 538 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-211ENST00000508546 MAMDC4Q6UXC1 1216 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 ERC1Q8IUD2 1116 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 DYNLL2Q96FJ2 89 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 FBXL18Q96ME1 805 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 GLT1D1Q96MS3 346 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 C1orf115Q9H7X2 142 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 ATP8A2Q9NTI2 1148 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 FBXO28Q9NVF7 368 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 ZNF532Q9HCE3 1301 aa11.34□□□□□ -0.59
NEDD9-211ENST00000508546 DNAJC25-GNG10A0A024R161 153 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 SNAI1O95863 264 aaPredicted RBP11.33□□□□□ -0.6
NEDD9-211ENST00000508546 RAB30Q15771 203 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 PSRC1Q6PGN9 363 aaPredicted RBP11.33□□□□□ -0.6
NEDD9-211ENST00000508546 ZNF467Q7Z7K2 595 aaPredicted RBP11.33□□□□□ -0.6
NEDD9-211ENST00000508546 AACSQ86V21 672 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 LCORLQ8N3X6 602 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 TMEM199Q8N511 208 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 PCSK9Q8NBP7 692 aaKnown RBP11.33□□□□□ -0.6
NEDD9-211ENST00000508546 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.33□□□□□ -0.6
NEDD9-211ENST00000508546 HERVK_113Q902F9 699 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 PHOX2BQ99453 314 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 KANSL2Q9H9L4 492 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 GOPCQ9HD26 462 aa11.33□□□□□ -0.6
NEDD9-211ENST00000508546 ARVCFO00192 962 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 ASGR1P07306 291 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 EEF2P13639 858 aaKnown RBP11.32□□□□□ -0.6
NEDD9-211ENST00000508546 CSF2RAP15509 400 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 CDK8P49336 464 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 C12orf60Q5U649 245 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 C16orf86Q6ZW13 317 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 ZNF365Q70YC5 407 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.32□□□□□ -0.6
NEDD9-211ENST00000508546 FAM126BQ8IXS8 530 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 UIMC1Q96RL1 719 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 TEX13BQ9BXU2 312 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 UPF3AQ9H1J1 476 aaKnown RBP11.32□□□□□ -0.6
NEDD9-211ENST00000508546 MSRAQ9UJ68 235 aa11.32□□□□□ -0.6
NEDD9-211ENST00000508546 A0A0U1RQG5 324 aaPredicted RBP11.31□□□□□ -0.6
NEDD9-211ENST00000508546 MYADML2A6NDP7 307 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 C6orf222P0C671 652 aaPredicted RBP11.31□□□□□ -0.6
NEDD9-211ENST00000508546 ACRP10323 421 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 GJA9P57773 515 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 NKX3-2P78367 333 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 CEP85Q6P2H3 762 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 DDX11Q96FC9 970 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 MTIF3Q9H2K0 278 aaKnown RBP11.31□□□□□ -0.6
NEDD9-211ENST00000508546 ABHD16BQ9H3Z7 469 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms