RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 FEM1BQ9UK73 627 aa13.17□□□□□ -0.3
PTPN13-207ENST00000508063 PLIN4Q96Q06 1357 aa13.17□□□□□ -0.3
PTPN13-207ENST00000508063 ZNFX1Q9P2E3 1918 aaKnown RBP13.17□□□□□ -0.3
PTPN13-207ENST00000508063 FDX1P10109 184 aa13.16□□□□□ -0.3
PTPN13-207ENST00000508063 BMP8BP34820 402 aa13.16□□□□□ -0.3
PTPN13-207ENST00000508063 TFAP4Q01664 338 aa13.16□□□□□ -0.3
PTPN13-207ENST00000508063 TRPV1Q8NER1 839 aa13.16□□□□□ -0.3
PTPN13-207ENST00000508063 REPS2Q8NFH8 660 aa13.16□□□□□ -0.3
PTPN13-207ENST00000508063 NUP88Q99567 741 aaPredicted RBP13.16□□□□□ -0.3
PTPN13-207ENST00000508063 SENP6Q9GZR1 1112 aaPredicted RBP13.16□□□□□ -0.3
PTPN13-207ENST00000508063 ZMYND8Q9ULU4 1186 aaPredicted RBP13.16□□□□□ -0.3
PTPN13-207ENST00000508063 TSPY2A6NKD2 308 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 KBTBD13C9JR72 458 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 ATP2A1O14983 1001 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 BMP3P12645 472 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 SLFN13Q68D06 897 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 SNRNP48Q6IEG0 339 aaKnown RBP13.15□□□□□ -0.3
PTPN13-207ENST00000508063 KIFC2Q96AC6 838 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 DDX11Q96FC9 970 aa13.15□□□□□ -0.3
PTPN13-207ENST00000508063 OAZ1P54368 228 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 ALX1Q15699 326 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 LRRC26Q2I0M4 334 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 ZNF792Q3KQV3 632 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 MCMDC2Q4G0Z9 681 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 FAM47AQ5JRC9 791 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 CCDC129Q6ZRS4 1044 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 FAM160B2Q86V87 743 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 LRRC47Q8N1G4 583 aaKnown RBP13.14□□□□□ -0.31
PTPN13-207ENST00000508063 MSL3Q8N5Y2 521 aaKnown RBP13.14□□□□□ -0.31
PTPN13-207ENST00000508063 CHURC1Q8WUH1 139 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 GDF15Q99988 308 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 TINF2Q9BSI4 451 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 SLC38A10Q9HBR0 1119 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 FBXO40Q9UH90 709 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 ANAPC4Q9UJX5 808 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 ISY1Q9ULR0 285 aaKnown RBP13.14□□□□□ -0.31
PTPN13-207ENST00000508063 FARP1Q9Y4F1 1045 aaPredicted RBP13.14□□□□□ -0.31
PTPN13-207ENST00000508063 PLXNA1Q9UIW2 1896 aa13.14□□□□□ -0.31
PTPN13-207ENST00000508063 TRIM6-TRIM34B2RNG4 842 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 PGK2P07205 417 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 RARBP10826 455 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 SYN1P17600 705 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 SLC4A3P48751 1232 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 STAT2P52630 851 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 MFAP1P55081 439 aaKnown RBP13.13□□□□□ -0.31
PTPN13-207ENST00000508063 IKQ13123 557 aaPredicted RBP13.13□□□□□ -0.31
PTPN13-207ENST00000508063 PRAMEF19Q5SWL8 479 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 GJC2Q5T442 439 aaPredicted RBP13.13□□□□□ -0.31
PTPN13-207ENST00000508063 SMC5Q8IY18 1101 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 CPXCR1Q8N123 301 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 GMCL1Q96IK5 515 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 LNPKQ9C0E8 428 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 STX8Q9UNK0 236 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 CNPY2Q9Y2B0 182 aa13.13□□□□□ -0.31
PTPN13-207ENST00000508063 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.13□□□□□ -0.31
PTPN13-207ENST00000508063 TRIOBPQ9H2D6 2365 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 ORC4O43929 436 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 RANBP6O60518 1105 aaKnown RBP13.12□□□□□ -0.31
PTPN13-207ENST00000508063 SLC1A4P43007 532 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 MAGEA10P43363 369 aaPredicted RBP13.12□□□□□ -0.31
PTPN13-207ENST00000508063 CTDSPL2Q05D32 466 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 ANO1Q5XXA6 986 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 ZNF467Q7Z7K2 595 aaPredicted RBP13.12□□□□□ -0.31
PTPN13-207ENST00000508063 ANKRD35Q8N283 1001 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 CHST13Q8NET6 341 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 RILPL2Q969X0 211 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 RAVER2Q9HCJ3 691 aaKnown RBP13.12□□□□□ -0.31
PTPN13-207ENST00000508063 PRKAG2Q9UGJ0 569 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 SYNGAP1Q96PV0 1343 aa13.12□□□□□ -0.31
PTPN13-207ENST00000508063 TMEM232C9JQI7 657 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 FOXP2O15409 715 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 PLA2G6O60733 806 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 PCP11498 1178 aaKnown RBP13.11□□□□□ -0.31
PTPN13-207ENST00000508063 AKR1A1P14550 325 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 ATN1P54259 1190 aaPredicted RBP13.11□□□□□ -0.31
PTPN13-207ENST00000508063 VPS53Q5VIR6 699 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 B4GALNT3Q6L9W6 998 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPN13-207ENST00000508063 RNF180Q86T96 592 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 CHD1LQ86WJ1 897 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 STAG1Q8WVM7 1258 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 LBHD1Q9BQE6 289 aaPredicted RBP13.11□□□□□ -0.31
PTPN13-207ENST00000508063 UBE2OQ9C0C9 1292 aaKnown RBP13.11□□□□□ -0.31
PTPN13-207ENST00000508063 XPNPEP3Q9NQH7 507 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 TOMM22Q9NS69 142 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 RIPK3Q9Y572 518 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 ZMYM6O95789 1325 aa13.11□□□□□ -0.31
PTPN13-207ENST00000508063 DNAJC25-GNG10A0A024R161 153 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 FGAP02671 866 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 FGRP09769 529 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 MCCP23508 829 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 LRRC41Q15345 812 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 TKFCQ3LXA3 575 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 RCSD1Q6JBY9 416 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 MAMDC4Q6UXC1 1216 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 SLC39A5Q6ZMH5 540 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 TDHQ8IZJ6 230 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 PLCD3Q8N3E9 789 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 FAM227BQ96M60 508 aa13.1□□□□□ -0.31
PTPN13-207ENST00000508063 OSBPL3Q9H4L5 887 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms