RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 LEMD3Q9Y2U8 911 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GOLGA6L7A0A1B0GV03 622 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PP2D1A8MPX8 630 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CCDC172P0C7W6 258 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 STIM1Q13586 685 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 JDP2Q8WYK2 163 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SYMPKQ92797 1274 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 C6orf50Q9HD87 102 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ATP8A2Q9NTI2 1148 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CTAGE15A4D2H0 777 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CTAGE8P0CG41 777 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CDK8P49336 464 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ARID5AQ03989 594 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PPP2R5AQ15172 486 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CTAGE6Q86UF2 777 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CTAGE4Q8IX94 777 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CTNND2Q9UQB3 1225 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RGPD5Q99666 1765 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NEBLO76041 1014 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CFBP00751 764 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 EZRP15311 586 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 IFNAR1P17181 557 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 FGFR2P21802 821 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MAGEA9P43362 315 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TCERG1LQ5VWI1 586 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GPR161Q8N6U8 529 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 VGLL2Q8N8G2 317 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GJA10Q969M2 543 aa12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ZNF277Q9NRM2 450 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MCM3P25205 808 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MTIF2P46199 727 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CACNB1Q02641 598 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NAA25Q14CX7 972 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SLC39A14Q15043 492 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 UBE2SQ16763 222 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TBC1D16Q8TBP0 767 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 EXOC4Q96A65 974 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.03□□□□□ -0.486e-7■■■■■ 61.3
MSH5-SAPCD1-207ENST00000493662 RTEL1Q9NZ71 1219 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 DACH1Q9UI36 760 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GOLGA6L10A6NI86 522 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 FMNL1O95466 1100 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 YEATS4O95619 227 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MMP1P03956 469 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 VEGFAP15692 232 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ALDH1B1P30837 517 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SSR1P43307 286 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 POSTNQ15063 836 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SMARCC2Q8TAQ2 1214 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 AFAP1L1Q8TED9 768 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 KIFC2Q96AC6 838 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CEP95Q96GE4 821 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 POLLQ9UGP5 575 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PSDA5PKW4 1024 aaPredicted RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 BBOX1O75936 387 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PDE6BP35913 854 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ADKP55263 362 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TSGA10IPQ3SY00 556 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CEP112Q8N8E3 955 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 LZTFL1Q9NQ48 299 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RBM28Q9NW13 759 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GEMIN8Q9NWZ8 242 aaKnown RBP12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ADAM21Q9UKJ8 722 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 USP17L5A8MUK1 530 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GNAQP50148 359 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SLC20A2Q08357 652 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 STAG1Q8WVM7 1258 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CALML4Q96GE6 196 aa12.03□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUA9 196 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 EFCAB8A8MWE9 144 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 LIFRP42702 1097 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 FANCCQ00597 558 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 EZH2Q15910 746 aaKnown RBP12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TMEM266Q2M3C6 531 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 COL23A1Q86Y22 540 aaPredicted RBP12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 BLIDQ8IZY5 108 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CNPY4Q8N129 248 aa12.02□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CALML3P27482 149 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MYL5Q02045 173 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ODF2Q5BJF6 829 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MCTP2Q6DN12 878 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SRBD1Q8N5C6 995 aaKnown RBP12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CSRNP1Q96S65 589 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TMEM47Q9BQJ4 181 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PDE11AQ9HCR9 933 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SERPINB13Q9UIV8 391 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PCDHAC2Q9Y5I4 1007 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 IQUBQ8NA54 791 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CEP83Q9Y592 693 aa12.02□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ATP8B1O43520 1251 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CUTAO60888 179 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ATP2C2O75185 946 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TAL1P17542 331 aaPredicted RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PRAMEF18Q5VWM3 479 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NBPF3Q9H094 633 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SEPT11Q9NVA2 429 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 EIF3CLB5ME19 914 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CYP4A11Q02928 519 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms