RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 PDE4BQ07343 736 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 LRRC41Q15345 812 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 ANKRD45Q5TZF3 282 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 CPXCR1Q8N123 301 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 NEDD1Q8NHV4 660 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 MKL1Q969V6 931 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 KIFC2Q96AC6 838 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 NRBP1Q9UHY1 535 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 ATP11BQ9Y2G3 1177 aa18.7■□□□□ 0.58
SMPD4-220ENST00000491319 LRRC37A2A6NM11 1700 aa18.69■□□□□ 0.58
SMPD4-220ENST00000491319 SLC4A3P48751 1232 aa18.69■□□□□ 0.58
SMPD4-220ENST00000491319 LRIT3Q3SXY7 679 aa18.69■□□□□ 0.58
SMPD4-220ENST00000491319 GMCL1P1Q8NEA9 526 aa18.69■□□□□ 0.58
SMPD4-220ENST00000491319 LENG1Q96BZ8 264 aaPredicted RBP18.69■□□□□ 0.58
SMPD4-220ENST00000491319 RAVER2Q9HCJ3 691 aaKnown RBP18.69■□□□□ 0.58
SMPD4-220ENST00000491319 ZBTB47Q9UFB7 747 aaPredicted RBP18.69■□□□□ 0.58
SMPD4-220ENST00000491319 SYNPO2Q9UMS6 1093 aa18.69■□□□□ 0.58
SMPD4-220ENST00000491319 ATP2A1O14983 1001 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 SLC3A2P08195 630 aaKnown RBP18.68■□□□□ 0.58
SMPD4-220ENST00000491319 ZNF865P0CJ78 1059 aaPredicted RBP18.68■□□□□ 0.58
SMPD4-220ENST00000491319 RARBP10826 455 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 ADCYAP1R1P41586 468 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 TFAP4Q01664 338 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 CTDSPL2Q05D32 466 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 SLFN13Q68D06 897 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 SLC39A5Q6ZMH5 540 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 FERMT2Q96AC1 680 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 SLC38A10Q9HBR0 1119 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 XPNPEP3Q9NQH7 507 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 FEM1BQ9UK73 627 aa18.68■□□□□ 0.58
SMPD4-220ENST00000491319 CTDP1Q9Y5B0 961 aaPredicted RBP18.68■□□□□ 0.58
SMPD4-220ENST00000491319 LAMA4Q16363 1823 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 DNAJC25-GNG10A0A024R161 153 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 ZBED4O75132 1171 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 PGK1P00558 417 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 PDE1AP54750 535 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 SNX17Q15036 470 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 TRIM60Q495X7 471 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 VPS53Q5VIR6 699 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 CHMP4CQ96CF2 233 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 LBHD1Q9BQE6 289 aaPredicted RBP18.67■□□□□ 0.58
SMPD4-220ENST00000491319 INCENPQ9NQS7 918 aa18.67■□□□□ 0.58
SMPD4-220ENST00000491319 ISY1Q9ULR0 285 aaKnown RBP18.67■□□□□ 0.58
SMPD4-220ENST00000491319 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.67■□□□□ 0.58
SMPD4-220ENST00000491319 COL6A3P12111 3177 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 BMP3P12645 472 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 AKR1A1P14550 325 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 HDAC1Q13547 482 aaPredicted RBP18.66■□□□□ 0.58
SMPD4-220ENST00000491319 RASGRP2Q7LDG7 609 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 EVI5LQ96CN4 794 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 DDX11Q96FC9 970 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 PRKAG2Q9UGJ0 569 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 CNPY2Q9Y2B0 182 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 TACC3Q9Y6A5 838 aa18.66■□□□□ 0.58
SMPD4-220ENST00000491319 TMEM232C9JQI7 657 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 NMT2O60551 498 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 SNAI1O95863 264 aaPredicted RBP18.65■□□□□ 0.58
SMPD4-220ENST00000491319 Q7L0L9 218 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.65■□□□□ 0.58
SMPD4-220ENST00000491319 PRDM5Q9NQX1 630 aaPredicted RBP18.65■□□□□ 0.58
SMPD4-220ENST00000491319 HOMER2Q9NSB8 354 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 PHF24Q9UPV7 400 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 SYNGAP1Q96PV0 1343 aa18.65■□□□□ 0.58
SMPD4-220ENST00000491319 A0A0D9SFI3 127 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 TSPY2A6NKD2 308 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 STAT2P52630 851 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 OAZ1P54368 228 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 GPR153Q6NV75 609 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 MAMDC4Q6UXC1 1216 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 MSL3Q8N5Y2 521 aaKnown RBP18.64■□□□□ 0.57
SMPD4-220ENST00000491319 FAM227BQ96M60 508 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 FGD4Q96M96 766 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 YTHDC1Q96MU7 727 aaKnown RBP18.64■□□□□ 0.57
SMPD4-220ENST00000491319 PDLIM7Q9NR12 457 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 IL17RBQ9NRM6 502 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 ZHX1Q9UKY1 873 aaPredicted RBP18.64■□□□□ 0.57
SMPD4-220ENST00000491319 STX8Q9UNK0 236 aa18.64■□□□□ 0.57
SMPD4-220ENST00000491319 ADAMTS4O75173 837 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 MCCP23508 829 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 SLC1A4P43007 532 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 RNF180Q86T96 592 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 ANKRD35Q8N283 1001 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 DEFB123Q8N688 67 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 CHST13Q8NET6 341 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 GMCL1Q96IK5 515 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 LNPKQ9C0E8 428 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 HELLSQ9NRZ9 838 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 SYNRGQ9UMZ2 1314 aa18.63■□□□□ 0.57
SMPD4-220ENST00000491319 A0A1W2PQ45 241 aaPredicted RBP18.62■□□□□ 0.57
SMPD4-220ENST00000491319 A0A1W2PQY0 241 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 RANBP6O60518 1105 aaKnown RBP18.62■□□□□ 0.57
SMPD4-220ENST00000491319 IKQ13123 557 aaPredicted RBP18.62■□□□□ 0.57
SMPD4-220ENST00000491319 C1orf53Q5VUE5 145 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 KCTD1Q719H9 257 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 SH3RF1Q7Z6J0 888 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 ZNF467Q7Z7K2 595 aaPredicted RBP18.62■□□□□ 0.57
SMPD4-220ENST00000491319 FBXO40Q9UH90 709 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 ANAPC4Q9UJX5 808 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 ZNF536O15090 1300 aa18.62■□□□□ 0.57
SMPD4-220ENST00000491319 LAMA2P24043 3122 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms