RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 SMC5Q8IY18 1101 aa14.6□□□□□ -0.07
SDC3-204ENST00000487984 RWDD1Q9H446 243 aaPredicted RBP14.6□□□□□ -0.07
SDC3-204ENST00000487984 FEM1BQ9UK73 627 aa14.6□□□□□ -0.07
SDC3-204ENST00000487984 RIPK3Q9Y572 518 aa14.6□□□□□ -0.07
SDC3-204ENST00000487984 TACC3Q9Y6A5 838 aa14.6□□□□□ -0.07
SDC3-204ENST00000487984 ZBED4O75132 1171 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 BMP3P12645 472 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 MAGEA10P43363 369 aaPredicted RBP14.59□□□□□ -0.07
SDC3-204ENST00000487984 ALX1Q15699 326 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 B4GALNT3Q6L9W6 998 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 CPXCR1Q8N123 301 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 EXOC6Q8TAG9 804 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 TINF2Q9BSI4 451 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 SLC38A10Q9HBR0 1119 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 RAVER2Q9HCJ3 691 aaKnown RBP14.59□□□□□ -0.07
SDC3-204ENST00000487984 NRBP1Q9UHY1 535 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 ANAPC4Q9UJX5 808 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 DIS3Q9Y2L1 958 aaKnown RBP14.59□□□□□ -0.07
SDC3-204ENST00000487984 CTDP1Q9Y5B0 961 aaPredicted RBP14.59□□□□□ -0.07
SDC3-204ENST00000487984 COL11A1P12107 1806 aaPredicted RBP14.59□□□□□ -0.07
SDC3-204ENST00000487984 FRMPD3Q5JV73 1810 aa14.59□□□□□ -0.07
SDC3-204ENST00000487984 TSPY2A6NKD2 308 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 TMEM232C9JQI7 657 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 NMT2O60551 498 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 IGHDP01880 384 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 TAL1P17542 331 aaPredicted RBP14.58□□□□□ -0.08
SDC3-204ENST00000487984 BMP8BP34820 402 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 SLC4A3P48751 1232 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 ATN1P54259 1190 aaPredicted RBP14.58□□□□□ -0.08
SDC3-204ENST00000487984 NMIQ13287 307 aaPredicted RBP14.58□□□□□ -0.08
SDC3-204ENST00000487984 MCMDC2Q4G0Z9 681 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 ZNF589Q86UQ0 364 aaPredicted RBP14.58□□□□□ -0.08
SDC3-204ENST00000487984 TICAM2Q86XR7 235 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 ARRDC4Q8NCT1 418 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 GMCL1Q96IK5 515 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 IL17RBQ9NRM6 502 aa14.58□□□□□ -0.08
SDC3-204ENST00000487984 TRIM6-TRIM34B2RNG4 842 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 KBTBD13C9JR72 458 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 SOX1O00570 391 aaPredicted RBP14.57□□□□□ -0.08
SDC3-204ENST00000487984 ORC4O43929 436 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 FGAP02671 866 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 MYCNP04198 464 aaPredicted RBP14.57□□□□□ -0.08
SDC3-204ENST00000487984 SLC1A4P43007 532 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 PPP4R3BQ5MIZ7 849 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 CHD1LQ86WJ1 897 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 CHMP4CQ96CF2 233 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 ISY1Q9ULR0 285 aaKnown RBP14.57□□□□□ -0.08
SDC3-204ENST00000487984 STX8Q9UNK0 236 aa14.57□□□□□ -0.08
SDC3-204ENST00000487984 DNAJC25-GNG10A0A024R161 153 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 RANBP6O60518 1105 aaKnown RBP14.56□□□□□ -0.08
SDC3-204ENST00000487984 FGRP09769 529 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 ZNF865P0CJ78 1059 aaPredicted RBP14.56□□□□□ -0.08
SDC3-204ENST00000487984 HSPD1P10809 573 aaKnown RBP14.56□□□□□ -0.08
SDC3-204ENST00000487984 MCCP23508 829 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 STAT2P52630 851 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 OAZ1P54368 228 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 NUCB1Q02818 461 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 LRRC41Q15345 812 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.56□□□□□ -0.08
SDC3-204ENST00000487984 RASGRP2Q7LDG7 609 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 PLEKHM2Q8IWE5 1019 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 RILPL2Q969X0 211 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 DDX11Q96FC9 970 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 MYH4Q9Y623 1939 aa14.56□□□□□ -0.08
SDC3-204ENST00000487984 DNAH12Q6ZR08 3092 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 RARBP10826 455 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 NOVP48745 357 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 RTP1P59025 263 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 IKQ13123 557 aaPredicted RBP14.55□□□□□ -0.08
SDC3-204ENST00000487984 KCTD1Q719H9 257 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 FAM160B2Q86V87 743 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 MSL3Q8N5Y2 521 aaKnown RBP14.55□□□□□ -0.08
SDC3-204ENST00000487984 CHST13Q8NET6 341 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 CHURC1Q8WUH1 139 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 STAG1Q8WVM7 1258 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 LENG1Q96BZ8 264 aaPredicted RBP14.55□□□□□ -0.08
SDC3-204ENST00000487984 OSBPL3Q9H4L5 887 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 XPNPEP3Q9NQH7 507 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 HOMER2Q9NSB8 354 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 FBXO40Q9UH90 709 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 CNPY2Q9Y2B0 182 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 ZMYM6O95789 1325 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 CCDC171Q6TFL3 1326 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 SYNGAP1Q96PV0 1343 aa14.55□□□□□ -0.08
SDC3-204ENST00000487984 PLA2G6O60733 806 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 SNAI1O95863 264 aaPredicted RBP14.54□□□□□ -0.08
SDC3-204ENST00000487984 PGK1P00558 417 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 FDX1P10109 184 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 AKR1A1P14550 325 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 ADCYAP1R1P41586 468 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 MDM2Q00987 491 aaPredicted RBP14.54□□□□□ -0.08
SDC3-204ENST00000487984 RRP12Q5JTH9 1297 aaKnown RBP14.54□□□□□ -0.08
SDC3-204ENST00000487984 MAMDC4Q6UXC1 1216 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 SLC39A5Q6ZMH5 540 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 ANKRD35Q8N283 1001 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 LRCH3Q96II8 777 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 FGD4Q96M96 766 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 UBE2OQ9C0C9 1292 aaKnown RBP14.54□□□□□ -0.08
SDC3-204ENST00000487984 TOMM22Q9NS69 142 aa14.54□□□□□ -0.08
SDC3-204ENST00000487984 ATP11BQ9Y2G3 1177 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms