RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZNF576Q9H609 170 aa18.53■□□□□ 0.56
MCF2L-228ENST00000487354 STARD7Q9NQZ5 370 aa18.53■□□□□ 0.56
MCF2L-228ENST00000487354 ATP8A2Q9NTI2 1148 aa18.53■□□□□ 0.56
MCF2L-228ENST00000487354 RIPK3Q9Y572 518 aa18.53■□□□□ 0.56
MCF2L-228ENST00000487354 LCTP09848 1927 aa18.53■□□□□ 0.56
MCF2L-228ENST00000487354 SYNGAP1Q96PV0 1343 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 NCOR1O75376 2440 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 USP17L12C9JPN9 530 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 USP17L21D6R901 530 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 TIMP1P01033 207 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 MAMDC4Q6UXC1 1216 aa18.52■□□□□ 0.56
MCF2L-228ENST00000487354 XIRP2A4UGR9 3374 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 MOXD2PA6NHM9 499 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 GRXCR1A8MXD5 290 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 CST5P28325 142 aaPredicted RBP18.51■□□□□ 0.55
MCF2L-228ENST00000487354 CDK7P50613 346 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 KCNA10Q16322 511 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 TMEM240Q5SV17 173 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 SIRT2Q8IXJ6 389 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 MSL3Q8N5Y2 521 aaKnown RBP18.51■□□□□ 0.55
MCF2L-228ENST00000487354 TIFAQ96CG3 184 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 NUP88Q99567 741 aaPredicted RBP18.51■□□□□ 0.55
MCF2L-228ENST00000487354 PBX4Q9BYU1 374 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 KANSL2Q9H9L4 492 aa18.51■□□□□ 0.55
MCF2L-228ENST00000487354 CTAGE5O15320 804 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 MFSD5Q6N075 450 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 CTR9Q6PD62 1173 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.5■□□□□ 0.55
MCF2L-228ENST00000487354 PANK1Q8TE04 598 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 UPF3AQ9H1J1 476 aaKnown RBP18.5■□□□□ 0.55
MCF2L-228ENST00000487354 PAG1Q9NWQ8 432 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 CNPY2Q9Y2B0 182 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 BDP1A6H8Y1 2624 aa18.5■□□□□ 0.55
MCF2L-228ENST00000487354 DCDC2CA8MYV0 355 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 COPB2P35606 906 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 TEX13BQ9BXU2 312 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 KATNBL1Q9H079 304 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 GOPCQ9HD26 462 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 ELP1O95163 1332 aa18.49■□□□□ 0.55
MCF2L-228ENST00000487354 APBB1O00213 710 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 TNFRSF10AO00220 468 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 DUSP11O75319 330 aaKnown RBP18.48■□□□□ 0.55
MCF2L-228ENST00000487354 CSF2RAP15509 400 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 ADGRE1Q14246 886 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 HSP90AB4PQ58FF6 505 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 SNRNP48Q6IEG0 339 aaKnown RBP18.48■□□□□ 0.55
MCF2L-228ENST00000487354 FAM126BQ8IXS8 530 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 CLASRPQ8N2M8 674 aaKnown RBP18.48■□□□□ 0.55
MCF2L-228ENST00000487354 NUP133Q8WUM0 1156 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 KIF1BPQ96EK5 621 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 SLF1Q9BQI6 1058 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 BOLA2Q9H3K6 86 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 ZHX1Q9UKY1 873 aaPredicted RBP18.48■□□□□ 0.55
MCF2L-228ENST00000487354 FAM184BQ9ULE4 1060 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 TRANK1O15050 2925 aa18.48■□□□□ 0.55
MCF2L-228ENST00000487354 ATP2A1O14983 1001 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 ASGR1P07306 291 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 RASA1P20936 1047 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 ZNF467Q7Z7K2 595 aaPredicted RBP18.47■□□□□ 0.55
MCF2L-228ENST00000487354 HAUS7Q99871 368 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 PUS7LQ9H0K6 701 aaKnown RBP18.47■□□□□ 0.55
MCF2L-228ENST00000487354 PRDM12Q9H4Q4 367 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 RAPGEFL1Q9UHV5 662 aa18.47■□□□□ 0.55
MCF2L-228ENST00000487354 NDUFB10O96000 172 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 IFIT2P09913 472 aaKnown RBP18.46■□□□□ 0.55
MCF2L-228ENST00000487354 ACRP10323 421 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 ATP5JP18859 108 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 COL9A1P20849 921 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 GJA9P57773 515 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 PPIGQ13427 754 aaKnown RBP eCLIP18.46■□□□□ 0.552e-6■■□□□ 13.1
MCF2L-228ENST00000487354 ACVR2BQ13705 512 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 UBE3CQ15386 1083 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 AKNAD1Q5T1N1 836 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.46■□□□□ 0.55
MCF2L-228ENST00000487354 SLC4A4Q9Y6R1 1079 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 ASTN1O14525 1302 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 MROH7Q68CQ1 1323 aa18.46■□□□□ 0.55
MCF2L-228ENST00000487354 TCF20Q9UGU0 1960 aaKnown RBP18.45■□□□□ 0.54
MCF2L-228ENST00000487354 IGKV6D-41A0A0C4DH26 115 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 ARVCFO00192 962 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 CD4P01730 458 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 C6orf222P0C671 652 aaPredicted RBP18.45■□□□□ 0.54
MCF2L-228ENST00000487354 NKX3-2P78367 333 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 CCDC144BQ3MJ40 725 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 ZNF365Q70YC5 407 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 GLT1D1Q96MS3 346 aa18.45■□□□□ 0.54
MCF2L-228ENST00000487354 CXXC1Q9P0U4 656 aaPredicted RBP18.45■□□□□ 0.54
MCF2L-228ENST00000487354 A0A0U1RQG5 324 aaPredicted RBP18.44■□□□□ 0.54
MCF2L-228ENST00000487354 F5H6K3 240 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 RAD21O60216 631 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 KLRC3Q07444 240 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 PPP1R12CQ9BZL4 782 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 SLC38A10Q9HBR0 1119 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 NYAP2Q9P242 653 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 UMODL1Q5DID0 1318 aa18.44■□□□□ 0.54
MCF2L-228ENST00000487354 PTGS1P23219 599 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 ARMCX2Q7L311 632 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 SLC43A3Q8NBI5 491 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 PCSK9Q8NBP7 692 aaKnown RBP18.43■□□□□ 0.54
MCF2L-228ENST00000487354 ATXN2LQ8WWM7 1075 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms