RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 KIAA1683Q9H0B3 1180 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 PICK1Q9NRD5 415 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 PLA2G2EQ9NZK7 142 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 ARPP21Q9UBL0 812 aaPredicted RBP6.85□□□□□ -1.31
CUX1-208ENST00000485792 CPA4Q9UI42 421 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 AGTPBP1Q9UPW5 1226 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 SLC4A4Q9Y6R1 1079 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 WDR81Q562E7 1941 aa6.85□□□□□ -1.31
CUX1-208ENST00000485792 USP17L10C9JJH3 530 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 RNF40O75150 1001 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 GNRH1P01148 92 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 IGHA2P01877 340 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 CD46P15529 392 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 VCAM1P19320 739 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 SLC4A3P48751 1232 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 RGS19P49795 217 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 LACTBP83111 547 aaPredicted RBP6.84□□□□□ -1.31
CUX1-208ENST00000485792 SP3Q02447 781 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 PTH1RQ03431 593 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 CTDSPL2Q05D32 466 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 TAF1CQ15572 869 aaPredicted RBP6.84□□□□□ -1.31
CUX1-208ENST00000485792 ZYXQ15942 572 aaKnown RBP6.84□□□□□ -1.31
CUX1-208ENST00000485792 ABCB5Q2M3G0 1257 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 MCMDC2Q4G0Z9 681 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 NYAP1Q6ZVC0 841 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 CTU1Q7Z7A3 348 aaKnown RBP6.84□□□□□ -1.31
CUX1-208ENST00000485792 MKL1Q969V6 931 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 DDRGK1Q96HY6 314 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 ABHD8Q96I13 439 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 TRIM47Q96LD4 638 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 FSD1Q9BTV5 496 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 FAM117AQ9C073 453 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 AS3MTQ9HBK9 375 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 ZFYVE28Q9HCC9 887 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 IL17RBQ9NRM6 502 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 MORF4L1Q9UBU8 362 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 TSR3Q9UJK0 312 aaKnown RBP6.84□□□□□ -1.31
CUX1-208ENST00000485792 GABRQQ9UN88 632 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 ADAMTS5Q9UNA0 930 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 HPS5Q9UPZ3 1129 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 TMX2Q9Y320 296 aa6.84□□□□□ -1.31
CUX1-208ENST00000485792 RANBP2P49792 3224 aaKnown RBP6.84□□□□□ -1.32
CUX1-208ENST00000485792 MYH7BA7E2Y1 1941 aa6.84□□□□□ -1.32
CUX1-208ENST00000485792 CCDC171Q6TFL3 1326 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 FGAP02671 866 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 POLR3DP05423 398 aaPredicted RBP6.83□□□□□ -1.32
CUX1-208ENST00000485792 HSPD1P10809 573 aaKnown RBP6.83□□□□□ -1.32
CUX1-208ENST00000485792 TRIM32Q13049 653 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 Q3C1V9 767 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 RCSD1Q6JBY9 416 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 CATSPERGQ6ZRH7 1159 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 TMEM179Q6ZVK1 233 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 TNS4Q8IZW8 715 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 CRACR2BQ8N4Y2 399 aaPredicted RBP6.83□□□□□ -1.32
CUX1-208ENST00000485792 REPS2Q8NFH8 660 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 SHISA4Q96DD7 197 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 ERO1AQ96HE7 468 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 NUP88Q99567 741 aaPredicted RBP6.83□□□□□ -1.32
CUX1-208ENST00000485792 ASCC2Q9H1I8 757 aaPredicted RBP6.83□□□□□ -1.32
CUX1-208ENST00000485792 PORCNQ9H237 461 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 SENP2Q9HC62 589 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 FBXO28Q9NVF7 368 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 BTBD7Q9P203 1132 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 SYNPO2Q9UMS6 1093 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 PTCH2Q9Y6C5 1203 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 LAMA3Q16787 3333 aa6.83□□□□□ -1.32
CUX1-208ENST00000485792 ASTN1O14525 1302 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 ORC4O43929 436 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 CHMLP26374 656 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 GCLCP48506 637 aaPredicted RBP6.82□□□□□ -1.32
CUX1-208ENST00000485792 USP14P54578 494 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 PPARAQ07869 468 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 FAM110CQ1W6H9 321 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 FAM47AQ5JRC9 791 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 ERICH6BQ5W0A0 696 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 FBXO46Q6PJ61 603 aaPredicted RBP6.82□□□□□ -1.32
CUX1-208ENST00000485792 USP17L2Q6R6M4 530 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 GADL1Q6ZQY3 521 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 CENPQQ7L2Z9 268 aaPredicted RBP6.82□□□□□ -1.32
CUX1-208ENST00000485792 RDH13Q8NBN7 331 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 NEDD1Q8NHV4 660 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 ARMC5Q96C12 935 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 FGD4Q96M96 766 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 PARK7Q99497 189 aaKnown RBP6.82□□□□□ -1.32
CUX1-208ENST00000485792 P2RX7Q99572 595 aaKnown RBP6.82□□□□□ -1.32
CUX1-208ENST00000485792 KANSL2Q9H9L4 492 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 NYAP2Q9P242 653 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 RBPJLQ9UBG7 517 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 GJD2Q9UKL4 321 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 PTPN22Q9Y2R2 807 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 LTBP2Q14767 1821 aa6.82□□□□□ -1.32
CUX1-208ENST00000485792 MYPNQ86TC9 1320 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 NT5C2P49902 561 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 PRMT2P55345 433 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 ANTXR2P58335 489 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 HAND2P61296 217 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 PRKCZQ05513 592 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 SPICE1Q8N0Z3 855 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 LRRC47Q8N1G4 583 aaKnown RBP6.81□□□□□ -1.32
CUX1-208ENST00000485792 ANKRD13CQ8N6S4 541 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms