RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SHCBP1	Q8NEM2	672 aa		13.6	□□□□□ -0.23
CPNE1-222	ENST00000473373	CTNNA3	Q9UI47	895 aa		13.6	□□□□□ -0.23
CPNE1-222	ENST00000473373	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CPNE1-222	ENST00000473373	NR2E3	Q9Y5X4	410 aa		13.6	□□□□□ -0.23
CPNE1-222	ENST00000473373	ZMYM6	O95789	1325 aa		13.6	□□□□□ -0.23
CPNE1-222	ENST00000473373	IGKV6D-41	A0A0C4DH26	115 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	TMEM232	C9JQI7	657 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	FOXP2	O15409	715 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	ORC4	O43929	436 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	NMT2	O60551	498 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	MCC	P23508	829 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	GRB14	Q14449	540 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	TMEM132B	Q14DG7	1078 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	SNRNP48	Q6IEG0	339 aa	Known RBP	13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	POTEE	Q6S8J3	1075 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	GMCL1P1	Q8NEA9	526 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	CHURC1	Q8WUH1	139 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	ESR2	Q92731	530 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	DDX11	Q96FC9	970 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	PRO3102	Q9H379	93 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	SYNPO2	Q9UMS6	1093 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	MCM3AP	O60318	1980 aa		13.59	□□□□□ -0.23
CPNE1-222	ENST00000473373	SZT2	Q5T011	3432 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	MYCN	P04198	464 aa	Predicted RBP	13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	PC	P11498	1178 aa	Known RBP	13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	GSPT1	P15170	499 aa	Known RBP	13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	CACNB2	Q08289	660 aa	Predicted RBP	13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	KCTD1	Q719H9	257 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	FAM160B2	Q86V87	743 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	IQCA1	Q86XH1	822 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	RIOX2	Q8IUF8	465 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	SLC17A8	Q8NDX2	589 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	MKL1	Q969V6	931 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	DSCC1	Q9BVC3	393 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	TEX13B	Q9BXU2	312 aa		13.58	□□□□□ -0.24
CPNE1-222	ENST00000473373	SMCHD1	A6NHR9	2005 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	DLL1	O00548	723 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	EVI5	O60447	810 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	CAPN2	P17655	700 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	TRDN	Q13061	729 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	NPLOC4	Q8TAT6	608 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	STAG1	Q8WVM7	1258 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	ZKSCAN3	Q9BRR0	538 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	RAVER2	Q9HCJ3	691 aa	Known RBP	13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	PAK6	Q9NQU5	681 aa	Predicted RBP	13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	HOMER2	Q9NSB8	354 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	RAD50	Q92878	1312 aa		13.57	□□□□□ -0.24
CPNE1-222	ENST00000473373	SOX1	O00570	391 aa	Predicted RBP	13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	FDX1	P10109	184 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	TOP1	P11387	765 aa	Known RBP	13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	CCND3	P30281	292 aa	Predicted RBP	13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	CYP2C19	P33261	490 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	CCDC174	Q6PII3	467 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	KIAA1211	Q6ZU35	1233 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	NECAB2	Q7Z6G3	386 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	TBC1D10C	Q8IV04	446 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	ANKRD35	Q8N283	1001 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	USP6NL	Q92738	828 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	CCDC136	Q96JN2	1154 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	KRT23	Q9C075	422 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373	IL17RB	Q9NRM6	502 aa		13.56	□□□□□ -0.24
CPNE1-222	ENST00000473373		B4E1Z4	1266 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	KDM4A	O75164	1064 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	PGK2	P07205	417 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	CCDC178	Q5BJE1	867 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	RCSD1	Q6JBY9	416 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	ABRA	Q8N0Z2	381 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	DCAF4	Q8WV16	495 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	LRCH3	Q96II8	777 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	GMCL1	Q96IK5	515 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	UBAC1	Q9BSL1	405 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	KAT14	Q9H8E8	782 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	CNNM2	Q9H8M5	875 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	GPCPD1	Q9NPB8	672 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	FLRT1	Q9NZU1	646 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	ZNF214	Q9UL59	606 aa	Predicted RBP	13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	NEDD4	P46934	1319 aa		13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.55	□□□□□ -0.24
CPNE1-222	ENST00000473373	ALPK3	Q96L96	1907 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	DHX16	O60231	1041 aa	Known RBP	13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	MSC	O60682	206 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	HOXC6	P09630	235 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	ALAS1	P13196	640 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	CHML	P26374	656 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	RALYL	Q86SE5	291 aa	Known RBP	13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	PAWR	Q96IZ0	340 aa	Known RBP	13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	TMEM47	Q9BQJ4	181 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	FBXO40	Q9UH90	709 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	ADAMTS5	Q9UNA0	930 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	TACC3	Q9Y6A5	838 aa		13.54	□□□□□ -0.24
CPNE1-222	ENST00000473373	ERICH2	A1L162	156 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	COBL	O75128	1261 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	SNAP25	P60880	206 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	MAP3K21	Q5TCX8	1036 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	OLFML2B	Q68BL8	750 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	CASC1	Q6TDU7	716 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	ANKLE1	Q8NAG6	615 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	DIS3L	Q8TF46	1054 aa	Known RBP	13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	MAML3	Q96JK9	1138 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms