RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PPP1R9AQ9ULJ8 1098 aa17.26■□□□□ 0.35
COL9A3-209ENST00000469852 CNMDO75829 334 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 PLEKHA8P1O95397 391 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 TBC1D8O95759 1140 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 CDC27P30260 824 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 STAT2P52630 851 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 SNAP25P60880 206 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 COG2Q14746 738 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 ASPRV1Q53RT3 343 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 OTUD7BQ6GQQ9 843 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 BTNL9Q6UXG8 535 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 CMTR1Q8N1G2 835 aaKnown RBP17.25■□□□□ 0.35
COL9A3-209ENST00000469852 KIFC2Q96AC6 838 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 PARK7Q99497 189 aaKnown RBP17.25■□□□□ 0.35
COL9A3-209ENST00000469852 SLF1Q9BQI6 1058 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 TXNRD2Q9NNW7 524 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 FEM1BQ9UK73 627 aa17.25■□□□□ 0.35
COL9A3-209ENST00000469852 BAZ2BQ9UIF8 2168 aaKnown RBP17.24■□□□□ 0.35
COL9A3-209ENST00000469852 GOLGA8AA7E2F4 631 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 KLRF2D3W0D1 207 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 CA12O43570 354 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 IKQ13123 557 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-209ENST00000469852 STK3Q13188 491 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 GPATCH4Q5T3I0 446 aaKnown RBP17.24■□□□□ 0.35
COL9A3-209ENST00000469852 FANCBQ8NB91 859 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 MAP3K14Q99558 947 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 NCOA5Q9HCD5 579 aaKnown RBP17.24■□□□□ 0.35
COL9A3-209ENST00000469852 BTBD7Q9P203 1132 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 CPA4Q9UI42 421 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 PNMA3Q9UL41 463 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 PRR12Q9ULL5 1215 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 NID2Q14112 1375 aa17.24■□□□□ 0.35
COL9A3-209ENST00000469852 CYTH3O43739 400 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 PLA2G6O60733 806 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 DTNBO60941 627 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 ALDH1A1P00352 501 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 CALM1P0DP23 149 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 CALM2P0DP24 149 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 CALM3P0DP25 149 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 ADD1P35611 737 aaKnown RBP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 METAP2P50579 478 aaKnown RBP eCLIP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 CCT2P78371 535 aaKnown RBP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 SYDE2Q5VT97 1194 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 LBX2Q6XYB7 198 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 SYNE3Q6ZMZ3 975 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 FAM160B2Q86V87 743 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 SRBD1Q8N5C6 995 aaKnown RBP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 REPS2Q8NFH8 660 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 CTCFLQ8NI51 663 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 SMCR8Q8TEV9 937 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-209ENST00000469852 ZFYVE28Q9HCC9 887 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 RBPJLQ9UBG7 517 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 ADAMTS5Q9UNA0 930 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 ZSWIM8A7E2V4 1837 aa17.23■□□□□ 0.35
COL9A3-209ENST00000469852 MYPNQ86TC9 1320 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 SMCHD1A6NHR9 2005 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 VWA5AO00534 786 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 TLR2O60603 784 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 TAL1P17542 331 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-209ENST00000469852 RCAN1P53805 252 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 ST3GAL1Q11201 340 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 ANKRD1Q15327 319 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 ME3Q16798 604 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 RTN1Q16799 776 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 C17orf99Q6UX52 265 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 TMTC3Q6ZXV5 915 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 ADGRF4Q8IZF3 695 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 PRPF38AQ8NAV1 312 aaKnown RBP17.22■□□□□ 0.35
COL9A3-209ENST00000469852 CHURC1Q8WUH1 139 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 ZNF274Q96GC6 653 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-209ENST00000469852 PAGR1Q9BTK6 254 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 CFHR5Q9BXR6 569 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 HOXC10Q9NYD6 342 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 CASP8AP2Q9UKL3 1982 aa17.22■□□□□ 0.35
COL9A3-209ENST00000469852 BCRP11274 1271 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 FUT2Q10981 343 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 SCRN1Q12765 414 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 TMEM132BQ14DG7 1078 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 Q3C1V9 767 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 CCDC82Q8N4S0 544 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 ANKRD13CQ8N6S4 541 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 NECAB1Q8N987 351 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 JMJD4Q9H9V9 463 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 VAT1LQ9HCJ6 419 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 SAGE1Q9NXZ1 904 aa17.21■□□□□ 0.35
COL9A3-209ENST00000469852 ZNF536O15090 1300 aa17.21■□□□□ 0.34
COL9A3-209ENST00000469852 MYH6P13533 1939 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 CCDC85CA6NKD9 419 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 ST18O60284 1047 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 PFKFB2O60825 505 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 PPFIA3O75145 1194 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 KIF5BP33176 963 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 RGS19P49795 217 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 MCOLN1Q9GZU1 580 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 RANBP17Q9H2T7 1088 aaKnown RBP17.2■□□□□ 0.34
COL9A3-209ENST00000469852 RIOX1Q9H6W3 641 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 SLC38A10Q9HBR0 1119 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 ZNF214Q9UL59 606 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-209ENST00000469852 CNTNAP5Q8WYK1 1306 aa17.2■□□□□ 0.34
COL9A3-209ENST00000469852 hCG_1642624A0A1W2PR95 340 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms