RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 DIS3Q9Y2L1 958 aaKnown RBP29.15■■■□□ 2.26
PTCH1-210ENST00000468211 TSPY3P0CV98 308 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 TSPY8P0CW00 308 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 COPB2P35606 906 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 SLC4A3P48751 1232 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 TFAP4Q01664 338 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 PDE4BQ07343 736 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 LRRC41Q15345 812 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 GMCL1P1Q8NEA9 526 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 TACC3Q9Y6A5 838 aa29.14■■■□□ 2.26
PTCH1-210ENST00000468211 KBTBD13C9JR72 458 aa29.13■■■□□ 2.25
PTCH1-210ENST00000468211 VPS53Q5VIR6 699 aa29.13■■■□□ 2.25
PTCH1-210ENST00000468211 SLC39A5Q6ZMH5 540 aa29.13■■■□□ 2.25
PTCH1-210ENST00000468211 RAVER2Q9HCJ3 691 aaKnown RBP29.13■■■□□ 2.25
PTCH1-210ENST00000468211 ATP2A1O14983 1001 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 ZNF865P0CJ78 1059 aaPredicted RBP29.12■■■□□ 2.25
PTCH1-210ENST00000468211 ADCYAP1R1P41586 468 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 CTDSPL2Q05D32 466 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 HDAC1Q13547 482 aaPredicted RBP29.12■■■□□ 2.25
PTCH1-210ENST00000468211 SLFN13Q68D06 897 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 FERMT2Q96AC1 680 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 LENG1Q96BZ8 264 aaPredicted RBP29.12■■■□□ 2.25
PTCH1-210ENST00000468211 SLC38A10Q9HBR0 1119 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 NRBP1Q9UHY1 535 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 FEM1BQ9UK73 627 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 SYNPO2Q9UMS6 1093 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 ATP11BQ9Y2G3 1177 aa29.12■■■□□ 2.25
PTCH1-210ENST00000468211 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.12■■■□□ 2.25
PTCH1-210ENST00000468211 DNAJC25-GNG10A0A024R161 153 aa29.11■■■□□ 2.25
PTCH1-210ENST00000468211 ZBED4O75132 1171 aa29.11■■■□□ 2.25
PTCH1-210ENST00000468211 PDE1AP54750 535 aa29.11■■■□□ 2.25
PTCH1-210ENST00000468211 LRIT3Q3SXY7 679 aa29.11■■■□□ 2.25
PTCH1-210ENST00000468211 CHMP4CQ96CF2 233 aa29.11■■■□□ 2.25
PTCH1-210ENST00000468211 SLC3A2P08195 630 aaKnown RBP29.1■■■□□ 2.25
PTCH1-210ENST00000468211 XPNPEP3Q9NQH7 507 aa29.1■■■□□ 2.25
PTCH1-210ENST00000468211 PGK1P00558 417 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 BMP3P12645 472 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 SNX17Q15036 470 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 EVI5LQ96CN4 794 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 DDX11Q96FC9 970 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 IL17RBQ9NRM6 502 aa29.09■■■□□ 2.25
PTCH1-210ENST00000468211 ZBTB47Q9UFB7 747 aaPredicted RBP29.09■■■□□ 2.25
PTCH1-210ENST00000468211 NMT2O60551 498 aa29.08■■■□□ 2.25
PTCH1-210ENST00000468211 SNAI1O95863 264 aaPredicted RBP29.08■■■□□ 2.25
PTCH1-210ENST00000468211 RARBP10826 455 aa29.08■■■□□ 2.25
PTCH1-210ENST00000468211 TRIM60Q495X7 471 aa29.08■■■□□ 2.25
PTCH1-210ENST00000468211 COL6A3P12111 3177 aa29.08■■■□□ 2.25
PTCH1-210ENST00000468211 TMEM232C9JQI7 657 aa29.07■■■□□ 2.24
PTCH1-210ENST00000468211 RASGRP2Q7LDG7 609 aa29.07■■■□□ 2.24
PTCH1-210ENST00000468211 FAM227BQ96M60 508 aa29.07■■■□□ 2.24
PTCH1-210ENST00000468211 FGD4Q96M96 766 aa29.07■■■□□ 2.24
PTCH1-210ENST00000468211 PHF24Q9UPV7 400 aa29.07■■■□□ 2.24
PTCH1-210ENST00000468211 CTDP1Q9Y5B0 961 aaPredicted RBP29.07■■■□□ 2.24
PTCH1-210ENST00000468211 LAMA2P24043 3122 aaKnown RBP29.06■■■□□ 2.24
PTCH1-210ENST00000468211 MAMDC4Q6UXC1 1216 aa29.06■■■□□ 2.24
PTCH1-210ENST00000468211 Q7L0L9 218 aa29.06■■■□□ 2.24
PTCH1-210ENST00000468211 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.06■■■□□ 2.24
PTCH1-210ENST00000468211 YTHDC1Q96MU7 727 aaKnown RBP29.06■■■□□ 2.24
PTCH1-210ENST00000468211 CNPY2Q9Y2B0 182 aa29.06■■■□□ 2.24
PTCH1-210ENST00000468211 A0A0D9SFI3 127 aa29.05■■■□□ 2.24
PTCH1-210ENST00000468211 AKR1A1P14550 325 aa29.05■■■□□ 2.24
PTCH1-210ENST00000468211 MCCP23508 829 aa29.05■■■□□ 2.24
PTCH1-210ENST00000468211 GMCL1Q96IK5 515 aa29.05■■■□□ 2.24
PTCH1-210ENST00000468211 LBHD1Q9BQE6 289 aaPredicted RBP29.05■■■□□ 2.24
PTCH1-210ENST00000468211 ANAPC4Q9UJX5 808 aa29.05■■■□□ 2.24
PTCH1-210ENST00000468211 SYNGAP1Q96PV0 1343 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 TSPY2A6NKD2 308 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 OAZ1P54368 228 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 SH3RF1Q7Z6J0 888 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 MSL3Q8N5Y2 521 aaKnown RBP29.04■■■□□ 2.24
PTCH1-210ENST00000468211 LNPKQ9C0E8 428 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 HELLSQ9NRZ9 838 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 HOMER2Q9NSB8 354 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 PRKAG2Q9UGJ0 569 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 ISY1Q9ULR0 285 aaKnown RBP29.04■■■□□ 2.24
PTCH1-210ENST00000468211 STX8Q9UNK0 236 aa29.04■■■□□ 2.24
PTCH1-210ENST00000468211 ZNF536O15090 1300 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 ADAMTS4O75173 837 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 STAT2P52630 851 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 GPR153Q6NV75 609 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 KCTD1Q719H9 257 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 RNF180Q86T96 592 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 ANKRD35Q8N283 1001 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 CHST13Q8NET6 341 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 PRDM5Q9NQX1 630 aaPredicted RBP29.03■■■□□ 2.24
PTCH1-210ENST00000468211 PDLIM7Q9NR12 457 aa29.03■■■□□ 2.24
PTCH1-210ENST00000468211 SLC1A4P43007 532 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 ALX1Q15699 326 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 C1orf53Q5VUE5 145 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 ZNF467Q7Z7K2 595 aaPredicted RBP29.02■■■□□ 2.24
PTCH1-210ENST00000468211 DEFB123Q8N688 67 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 STAG1Q8WVM7 1258 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 AGBL1Q96MI9 1066 aa29.02■■■□□ 2.24
PTCH1-210ENST00000468211 ZHX1Q9UKY1 873 aaPredicted RBP29.02■■■□□ 2.24
PTCH1-210ENST00000468211 SYNRGQ9UMZ2 1314 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 TRIM43BA6NCK2 446 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 ADCY6O43306 1168 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 RANBP6O60518 1105 aaKnown RBP29.01■■■□□ 2.23
PTCH1-210ENST00000468211 FGAP02671 866 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 FGRP09769 529 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms