RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 MTMR7Q9Y216 660 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 ATP11BQ9Y2G3 1177 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 COL11A1P12107 1806 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-206ENST00000466591 TRIOBPQ9H2D6 2365 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 FRMPD3Q5JV73 1810 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 PDE1AP54750 535 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 MDM2Q00987 491 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-206ENST00000466591 B4GALNT3Q6L9W6 998 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 GMCL1P1Q8NEA9 526 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 RILPL2Q969X0 211 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 GDF15Q99988 308 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 LNPKQ9C0E8 428 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 PRO3102Q9H379 93 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 RAVER2Q9HCJ3 691 aaKnown RBP20.77■□□□□ 0.92
COL7A1-206ENST00000466591 XPNPEP3Q9NQH7 507 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 PRDM5Q9NQX1 630 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-206ENST00000466591 NRBP1Q9UHY1 535 aa20.77■□□□□ 0.92
COL7A1-206ENST00000466591 DIS3Q9Y2L1 958 aaKnown RBP20.77■□□□□ 0.92
COL7A1-206ENST00000466591 BMP8BP34820 402 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 SLC1A4P43007 532 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 STAT2P52630 851 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 RTP1P59025 263 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 CTDSPL2Q05D32 466 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 AAMPQ13685 434 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 RRP12Q5JTH9 1297 aaKnown RBP20.76■□□□□ 0.91
COL7A1-206ENST00000466591 RNF180Q86T96 592 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 CHURC1Q8WUH1 139 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 HELLSQ9NRZ9 838 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 HOMER2Q9NSB8 354 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 FBXO40Q9UH90 709 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 MYH4Q9Y623 1939 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 PARP14Q460N5 1801 aa20.76■□□□□ 0.91
COL7A1-206ENST00000466591 IGKV6D-41A0A0C4DH26 115 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 TMEM232C9JQI7 657 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 AKR1A1P14550 325 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 TDHQ8IZJ6 230 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 MKL1Q969V6 931 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 FERMT2Q96AC1 680 aa20.75■□□□□ 0.91
COL7A1-206ENST00000466591 ZHX1Q9UKY1 873 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-206ENST00000466591 GREB1LQ9C091 1923 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-206ENST00000466591 FDX1P10109 184 aa20.74■□□□□ 0.91
COL7A1-206ENST00000466591 ADCYAP1R1P41586 468 aa20.74■□□□□ 0.91
COL7A1-206ENST00000466591 ZNF792Q3KQV3 632 aa20.74■□□□□ 0.91
COL7A1-206ENST00000466591 FAM160B2Q86V87 743 aa20.74■□□□□ 0.91
COL7A1-206ENST00000466591 REPS2Q8NFH8 660 aa20.74■□□□□ 0.91
COL7A1-206ENST00000466591 PLIN4Q96Q06 1357 aa20.73■□□□□ 0.91
COL7A1-206ENST00000466591 MCCP23508 829 aa20.73■□□□□ 0.91
COL7A1-206ENST00000466591 MFAP1P55081 439 aaKnown RBP20.73■□□□□ 0.91
COL7A1-206ENST00000466591 CCDC96Q2M329 555 aa20.73■□□□□ 0.91
COL7A1-206ENST00000466591 MCMDC2Q4G0Z9 681 aa20.73■□□□□ 0.91
COL7A1-206ENST00000466591 SLC38A10Q9HBR0 1119 aa20.73■□□□□ 0.91
COL7A1-206ENST00000466591 OAZ1P54368 228 aa20.72■□□□□ 0.91
COL7A1-206ENST00000466591 LRRC41Q15345 812 aa20.72■□□□□ 0.91
COL7A1-206ENST00000466591 MSL3Q8N5Y2 521 aaKnown RBP20.72■□□□□ 0.91
COL7A1-206ENST00000466591 CHST13Q8NET6 341 aa20.72■□□□□ 0.91
COL7A1-206ENST00000466591 RIPK3Q9Y572 518 aa20.72■□□□□ 0.91
COL7A1-206ENST00000466591 ATP2A1O14983 1001 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 PGK1P00558 417 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 VPS53Q5VIR6 699 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 SLC39A5Q6ZMH5 540 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 KCTD1Q719H9 257 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 STAG1Q8WVM7 1258 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 LRCH3Q96II8 777 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 ACAD9Q9H845 621 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 SPC25Q9HBM1 224 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 FAM184BQ9ULE4 1060 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 SALL3Q9BXA9 1300 aa20.71■□□□□ 0.91
COL7A1-206ENST00000466591 IGHA2P01877 340 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 CCDC174Q6PII3 467 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 GMCL1Q96IK5 515 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 FAM227BQ96M60 508 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 PLXNA1Q9UIW2 1896 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 SYNGAP1Q96PV0 1343 aa20.7■□□□□ 0.9
COL7A1-206ENST00000466591 ZNFX1Q9P2E3 1918 aaKnown RBP20.7■□□□□ 0.9
COL7A1-206ENST00000466591 A0A0D9SFI3 127 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 POTEB2H3BUK9 544 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 SOX1O00570 391 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-206ENST00000466591 ALAS1P13196 640 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 TAL1P17542 331 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-206ENST00000466591 NMIQ13287 307 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-206ENST00000466591 TRIM60Q495X7 471 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 NOL8Q76FK4 1167 aaKnown RBP20.69■□□□□ 0.9
COL7A1-206ENST00000466591 INCENPQ9NQS7 918 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 DIAPH3Q9NSV4 1193 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 RNF146Q9NTX7 359 aa20.69■□□□□ 0.9
COL7A1-206ENST00000466591 NMT2O60551 498 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 RCSD1Q6JBY9 416 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 ZNF467Q7Z7K2 595 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-206ENST00000466591 CHD1LQ86WJ1 897 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 VTI1AQ96AJ9 217 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 ANAPC4Q9UJX5 808 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.68■□□□□ 0.9
COL7A1-206ENST00000466591 CCDC171Q6TFL3 1326 aa20.68■□□□□ 0.9
COL7A1-206ENST00000466591 FGAP02671 866 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 ZNF865P0CJ78 1059 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-206ENST00000466591 HAND2P61296 217 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 MFSD6Q6ZSS7 791 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 TICAM2Q86XR7 235 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 NUP133Q8WUM0 1156 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 DCAF4Q8WV16 495 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms