RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PRPF38AQ8NAV1 312 aaKnown RBP19.21■□□□□ 0.67
COL7A1-204ENST00000462475 TTC41PQ6P2S7 1318 aa19.21■□□□□ 0.67
COL7A1-204ENST00000462475 TRIM43BA6NCK2 446 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 PATL2C9JE40 543 aaKnown RBP19.2■□□□□ 0.66
COL7A1-204ENST00000462475 AKR1A1P14550 325 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 SLC4A3P48751 1232 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 TLE2Q04725 743 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 C1orf53Q5VUE5 145 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 ZNF444Q8N0Y2 327 aaPredicted RBP19.2■□□□□ 0.66
COL7A1-204ENST00000462475 CPXCR1Q8N123 301 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 BADQ92934 168 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 KIFC2Q96AC6 838 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 TRIM43Q96BQ3 446 aaPredicted RBP19.2■□□□□ 0.66
COL7A1-204ENST00000462475 ZNF287Q9HBT7 754 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 MTMR4Q9NYA4 1195 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 CNPY2Q9Y2B0 182 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 PLXNA1Q9UIW2 1896 aa19.2■□□□□ 0.66
COL7A1-204ENST00000462475 PLIN4Q96Q06 1357 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 ZNFX1Q9P2E3 1918 aaKnown RBP19.19■□□□□ 0.66
COL7A1-204ENST00000462475 DNAJC25-GNG10A0A024R161 153 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 POTEB2H3BUK9 544 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 ATP2A1O14983 1001 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 ADAMTS4O75173 837 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 SHHQ15465 462 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 C9orf50Q5SZB4 431 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 RNF180Q86T96 592 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 MKL1Q969V6 931 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 FSD1Q9BTV5 496 aa19.19■□□□□ 0.66
COL7A1-204ENST00000462475 RAVER2Q9HCJ3 691 aaKnown RBP19.19■□□□□ 0.66
COL7A1-204ENST00000462475 A0A1W2PQ45 241 aaPredicted RBP19.18■□□□□ 0.66
COL7A1-204ENST00000462475 A0A1W2PQY0 241 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 ERC2O15083 957 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 ZBED4O75132 1171 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 SNAI1O95863 264 aaPredicted RBP19.18■□□□□ 0.66
COL7A1-204ENST00000462475 TTLL1O95922 423 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 LRRFIP1Q32MZ4 808 aaKnown RBP19.18■□□□□ 0.66
COL7A1-204ENST00000462475 GMCL1P1Q8NEA9 526 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 DDX11Q96FC9 970 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 GUCD1Q96NT3 240 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 NACAP1Q9BZK3 213 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 SLC38A10Q9HBR0 1119 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 ZHX1Q9UKY1 873 aaPredicted RBP19.18■□□□□ 0.66
COL7A1-204ENST00000462475 SYNPO2Q9UMS6 1093 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 SYNGAP1Q96PV0 1343 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 SYNRGQ9UMZ2 1314 aa19.18■□□□□ 0.66
COL7A1-204ENST00000462475 UNC80Q8N2C7 3258 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 TSPY3P0CV98 308 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 TSPY8P0CW00 308 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 ITGB8P26012 769 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 PPARAQ07869 468 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 ZMYM1Q5SVZ6 1142 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 MSL3Q8N5Y2 521 aaKnown RBP19.17■□□□□ 0.66
COL7A1-204ENST00000462475 NEDD1Q8NHV4 660 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 FGD4Q96M96 766 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 NAPBQ9H115 298 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 FEM1BQ9UK73 627 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 CTDP1Q9Y5B0 961 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-204ENST00000462475 SMCHD1A6NHR9 2005 aa19.17■□□□□ 0.66
COL7A1-204ENST00000462475 MYH4Q9Y623 1939 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 DLL1O00548 723 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 FOXP2O15409 715 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 PQBP1O60828 265 aaKnown RBP19.16■□□□□ 0.66
COL7A1-204ENST00000462475 CLTBP09497 229 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 PDE4BQ07343 736 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 SLFN13Q68D06 897 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 FAM109BQ6ICB4 259 aaPredicted RBP19.16■□□□□ 0.66
COL7A1-204ENST00000462475 MAMDC4Q6UXC1 1216 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.16■□□□□ 0.66
COL7A1-204ENST00000462475 FAM161BQ96MY7 647 aa19.16■□□□□ 0.66
COL7A1-204ENST00000462475 MYADML2A6NDP7 307 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 BMP3P12645 472 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 MX1P20591 662 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 TFAP4Q01664 338 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 CCDC129Q6ZRS4 1044 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 ZNF467Q7Z7K2 595 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-204ENST00000462475 CHMP4CQ96CF2 233 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 FAM184BQ9ULE4 1060 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 ISY1Q9ULR0 285 aaKnown RBP19.15■□□□□ 0.66
COL7A1-204ENST00000462475 SALL3Q9BXA9 1300 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 CDH23Q9H251 3354 aa19.15■□□□□ 0.66
COL7A1-204ENST00000462475 TMEM232C9JQI7 657 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 ADCY6O43306 1168 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 ACLYP53396 1101 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 OAZ1P54368 228 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 IRX5P78411 483 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-204ENST00000462475 ANKRD35Q8N283 1001 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 KLHDC9Q8NEP7 349 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 TSEN34Q9BSV6 310 aaKnown RBP19.14■□□□□ 0.65
COL7A1-204ENST00000462475 HOMER2Q9NSB8 354 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-204ENST00000462475 FBXO40Q9UH90 709 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.14■□□□□ 0.65
COL7A1-204ENST00000462475 TACC3Q9Y6A5 838 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 EYSQ5T1H1 3165 aa19.14■□□□□ 0.65
COL7A1-204ENST00000462475 KIAA0355O15063 1070 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 SLC3A2P08195 630 aaKnown RBP19.13■□□□□ 0.65
COL7A1-204ENST00000462475 EPHB4P54760 987 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 ACVR2BQ13705 512 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 ZNF697Q5TEC3 545 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 CCSAPQ6IQ19 270 aaPredicted RBP19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms