RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 COBLO75128 1261 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 SYN1P17600 705 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 MX1P20591 662 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 MAGEA10P43363 369 aaPredicted RBP8.41□□□□□ -1.06
VPS41-208ENST00000448833 LRRC26Q2I0M4 334 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 KIAA1755Q5JYT7 1200 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 FAM83BQ5T0W9 1011 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 C1orf53Q5VUE5 145 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 ZNF467Q7Z7K2 595 aaPredicted RBP8.41□□□□□ -1.06
VPS41-208ENST00000448833 GMCL1P1Q8NEA9 526 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 NEDD1Q8NHV4 660 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 EVI5LQ96CN4 794 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 MTMR4Q9NYA4 1195 aa8.41□□□□□ -1.06
VPS41-208ENST00000448833 ZNF214Q9UL59 606 aaPredicted RBP8.41□□□□□ -1.06
VPS41-208ENST00000448833 SYNGAP1Q96PV0 1343 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 NDUFB10O96000 172 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 AKR1A1P14550 325 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 ZNF792Q3KQV3 632 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 ZMYM1Q5SVZ6 1142 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 GJC2Q5T442 439 aaPredicted RBP8.4□□□□□ -1.06
VPS41-208ENST00000448833 SNRNP48Q6IEG0 339 aaKnown RBP8.4□□□□□ -1.06
VPS41-208ENST00000448833 SLC39A5Q6ZMH5 540 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 FAM160B2Q86V87 743 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 CLEC10AQ8IUN9 316 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 TRPV1Q8NER1 839 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 CHST13Q8NET6 341 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 NUP133Q8WUM0 1156 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 TSEN34Q9BSV6 310 aaKnown RBP8.4□□□□□ -1.06
VPS41-208ENST00000448833 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS41-208ENST00000448833 SPC25Q9HBM1 224 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 XPNPEP3Q9NQH7 507 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 FBXO28Q9NVF7 368 aa8.4□□□□□ -1.06
VPS41-208ENST00000448833 LAMA2P24043 3122 aaKnown RBP8.4□□□□□ -1.07
VPS41-208ENST00000448833 PLIN4Q96Q06 1357 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 IGKV6D-41A0A0C4DH26 115 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PLA2G6O60733 806 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PCP11498 1178 aaKnown RBP8.39□□□□□ -1.07
VPS41-208ENST00000448833 BMP3P12645 472 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 NT5C2P49902 561 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 STAT2P52630 851 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 MFAP1P55081 439 aaKnown RBP8.39□□□□□ -1.07
VPS41-208ENST00000448833 RTP1P59025 263 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 TFAP4Q01664 338 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PPARAQ07869 468 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 HDAC1Q13547 482 aaPredicted RBP8.39□□□□□ -1.07
VPS41-208ENST00000448833 LRRC41Q15345 812 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 TKFCQ3LXA3 575 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 ANKRD45Q5TZF3 282 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 SLFN13Q68D06 897 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 MAMDC4Q6UXC1 1216 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS41-208ENST00000448833 ANKRD35Q8N283 1001 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PI4K2BQ8TCG2 481 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 KIFC2Q96AC6 838 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 CEP95Q96GE4 821 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 GMCL1Q96IK5 515 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 ABHD16BQ9H3Z7 469 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 SLC38A10Q9HBR0 1119 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 HELLSQ9NRZ9 838 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PNMA2Q9UL42 364 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 FAM184BQ9ULE4 1060 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 PCDHB15Q9Y5E8 787 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 TACC3Q9Y6A5 838 aa8.39□□□□□ -1.07
VPS41-208ENST00000448833 MROH7Q68CQ1 1323 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 MOXD2PA6NHM9 499 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 TSPY2A6NKD2 308 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 M0R2C6 588 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 DUSP11O75319 330 aaKnown RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 GABBR2O75899 941 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 CHGBP05060 677 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 PGK2P07205 417 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 ADCYAP1R1P41586 468 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 SLC1A4P43007 532 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 ATN1P54259 1190 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 RRP1P56182 461 aaKnown RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 MDM2Q00987 491 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 IKQ13123 557 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 SNX17Q15036 470 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 ALX1Q15699 326 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 PRAMEF19Q5SWL8 479 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 TSHZ3Q63HK5 1081 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 FAM109BQ6ICB4 259 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 RCSD1Q6JBY9 416 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 CPXCR1Q8N123 301 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 STK11IPQ8N1F8 1099 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 PCSK9Q8NBP7 692 aaKnown RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 REPS2Q8NFH8 660 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 STAG1Q8WVM7 1258 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 RWDD1Q9H446 243 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 EPB41L4AQ9HCS5 686 aaPredicted RBP8.38□□□□□ -1.07
VPS41-208ENST00000448833 ANAPC4Q9UJX5 808 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 PHF24Q9UPV7 400 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 ATP11BQ9Y2G3 1177 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 MCM3APO60318 1980 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 COL6A3P12111 3177 aa8.38□□□□□ -1.07
VPS41-208ENST00000448833 LAMA3Q16787 3333 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 DNAJC25-GNG10A0A024R161 153 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 ASB14A6NK59 587 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 DCDC2CA8MYV0 355 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 TMEM232C9JQI7 657 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms