RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CHMP4CQ96CF2 233 aa20.32■□□□□ 0.84
TRIM39-209ENST00000428728 TFAP4Q01664 338 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 ZNF792Q3KQV3 632 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 TDHQ8IZJ6 230 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 NEDD1Q8NHV4 660 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 TINF2Q9BSI4 451 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 ATP11BQ9Y2G3 1177 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 RIPK3Q9Y572 518 aa20.31■□□□□ 0.84
TRIM39-209ENST00000428728 FOXP2O15409 715 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 ZBED4O75132 1171 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 CTDSPL2Q05D32 466 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 SLFN13Q68D06 897 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 MKL1Q969V6 931 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 RAVER2Q9HCJ3 691 aaKnown RBP20.3■□□□□ 0.84
TRIM39-209ENST00000428728 FEM1BQ9UK73 627 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 LRRC37A2A6NM11 1700 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 LAMA4Q16363 1823 aa20.3■□□□□ 0.84
TRIM39-209ENST00000428728 TAL1P17542 331 aaPredicted RBP20.29■□□□□ 0.84
TRIM39-209ENST00000428728 PDE1AP54750 535 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 HDAC1Q13547 482 aaPredicted RBP20.29■□□□□ 0.84
TRIM39-209ENST00000428728 LRRC41Q15345 812 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 VPS53Q5VIR6 699 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 GMCL1P1Q8NEA9 526 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 LENG1Q96BZ8 264 aaPredicted RBP20.29■□□□□ 0.84
TRIM39-209ENST00000428728 EVI5LQ96CN4 794 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 DDX11Q96FC9 970 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 XPNPEP3Q9NQH7 507 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 DIS3Q9Y2L1 958 aaKnown RBP20.29■□□□□ 0.84
TRIM39-209ENST00000428728 LAMA3Q16787 3333 aa20.29■□□□□ 0.84
TRIM39-209ENST00000428728 DNAH12Q6ZR08 3092 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 LCTP09848 1927 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 TSPY2A6NKD2 308 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 RARBP10826 455 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 BMP3P12645 472 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 ADCYAP1R1P41586 468 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 IKQ13123 557 aaPredicted RBP20.28■□□□□ 0.84
TRIM39-209ENST00000428728 FERMT2Q96AC1 680 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 LBHD1Q9BQE6 289 aaPredicted RBP20.28■□□□□ 0.84
TRIM39-209ENST00000428728 SLC38A10Q9HBR0 1119 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 PRKAG2Q9UGJ0 569 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 NRBP1Q9UHY1 535 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 SYNPO2Q9UMS6 1093 aa20.28■□□□□ 0.84
TRIM39-209ENST00000428728 ATP2A1O14983 1001 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 PGK1P00558 417 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 TRIM60Q495X7 471 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 SLC39A5Q6ZMH5 540 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 LNPKQ9C0E8 428 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 INCENPQ9NQS7 918 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 PRDM5Q9NQX1 630 aaPredicted RBP20.27■□□□□ 0.84
TRIM39-209ENST00000428728 HOMER2Q9NSB8 354 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 CNPY2Q9Y2B0 182 aa20.27■□□□□ 0.84
TRIM39-209ENST00000428728 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.27■□□□□ 0.84
TRIM39-209ENST00000428728 A0A0D9SFI3 127 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 TMEM232C9JQI7 657 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 NMT2O60551 498 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 FAM227BQ96M60 508 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 STX8Q9UNK0 236 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 MTMR7Q9Y216 660 aa20.26■□□□□ 0.83
TRIM39-209ENST00000428728 DNAJC25-GNG10A0A024R161 153 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 ZNF865P0CJ78 1059 aaPredicted RBP20.25■□□□□ 0.83
TRIM39-209ENST00000428728 AKR1A1P14550 325 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 SLC1A4P43007 532 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 STAT2P52630 851 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 RASGRP2Q7LDG7 609 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 ANKRD35Q8N283 1001 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 ZHX1Q9UKY1 873 aaPredicted RBP20.25■□□□□ 0.83
TRIM39-209ENST00000428728 TACC3Q9Y6A5 838 aa20.25■□□□□ 0.83
TRIM39-209ENST00000428728 RANBP6O60518 1105 aaKnown RBP20.24■□□□□ 0.83
TRIM39-209ENST00000428728 MCCP23508 829 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 SNX17Q15036 470 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 LRIT3Q3SXY7 679 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 KCTD1Q719H9 257 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 RNF180Q86T96 592 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 GMCL1Q96IK5 515 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 HELLSQ9NRZ9 838 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 TOMM22Q9NS69 142 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 SYNGAP1Q96PV0 1343 aa20.24■□□□□ 0.83
TRIM39-209ENST00000428728 TRIM6-TRIM34B2RNG4 842 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 OAZ1P54368 228 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 PPP4R3BQ5MIZ7 849 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 B4GALNT3Q6L9W6 998 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 FAM160B2Q86V87 743 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 MSL3Q8N5Y2 521 aaKnown RBP20.23■□□□□ 0.83
TRIM39-209ENST00000428728 CHST13Q8NET6 341 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 IL17RBQ9NRM6 502 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 FBXO40Q9UH90 709 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 ANAPC4Q9UJX5 808 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 PHF24Q9UPV7 400 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 SYNRGQ9UMZ2 1314 aa20.23■□□□□ 0.83
TRIM39-209ENST00000428728 SNAI1O95863 264 aaPredicted RBP20.22■□□□□ 0.83
TRIM39-209ENST00000428728 NMIQ13287 307 aaPredicted RBP20.22■□□□□ 0.83
TRIM39-209ENST00000428728 RRP12Q5JTH9 1297 aaKnown RBP20.22■□□□□ 0.83
TRIM39-209ENST00000428728 Q7L0L9 218 aa20.22■□□□□ 0.83
TRIM39-209ENST00000428728 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.22■□□□□ 0.83
TRIM39-209ENST00000428728 ZNF589Q86UQ0 364 aaPredicted RBP20.22■□□□□ 0.83
TRIM39-209ENST00000428728 CHURC1Q8WUH1 139 aa20.22■□□□□ 0.83
TRIM39-209ENST00000428728 RILPL2Q969X0 211 aa20.22■□□□□ 0.83
TRIM39-209ENST00000428728 PDLIM7Q9NR12 457 aa20.22■□□□□ 0.83
TRIM39-209ENST00000428728 ADAMTS4O75173 837 aa20.21■□□□□ 0.83
TRIM39-209ENST00000428728 SNAP25P60880 206 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms