RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ATP8B1O43520 1251 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 APBA3O96018 575 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 GYPCP04921 128 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 LDHBP07195 334 aaKnown RBP16.16■□□□□ 0.18
LIG1-202ENST00000427526 FILIP1LQ4L180 1135 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 FAM47AQ5JRC9 791 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 CPLX3Q8WVH0 158 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 A0A0U1RQJ8 604 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 CASP14P31944 242 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 SPTY2D1Q68D10 685 aaPredicted RBP16.15■□□□□ 0.18
LIG1-202ENST00000427526 ZNF804AQ7Z570 1209 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 C4orf32Q8N8J7 132 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 WDR66Q8TBY9 1149 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 ATRIPQ8WXE1 791 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 BLZF1Q9H2G9 400 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 ATP8A2Q9NTI2 1148 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 CTNND2Q9UQB3 1225 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 FXR1P51114 621 aaKnown RBP eCLIP16.15■□□□□ 0.18
LIG1-202ENST00000427526 NLRP5P59047 1200 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 SBK1Q52WX2 424 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 RCSD1Q6JBY9 416 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 COL23A1Q86Y22 540 aaPredicted RBP16.15■□□□□ 0.18
LIG1-202ENST00000427526 PYM1Q9BRP8 204 aaKnown RBP16.15■□□□□ 0.18
LIG1-202ENST00000427526 RWDD2AQ9UIY3 292 aa16.15■□□□□ 0.18
LIG1-202ENST00000427526 CCDC12Q8WUD4 166 aaPredicted RBP16.14■□□□□ 0.17
LIG1-202ENST00000427526 RABGGTAQ92696 567 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 CCDC51Q96ER9 411 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 UBXN6Q9BZV1 441 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 CD209Q9NNX6 404 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 LZTFL1Q9NQ48 299 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 POLLQ9UGP5 575 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 GGA1Q9UJY5 639 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 MYH13Q9UKX3 1938 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 GTPBP6O43824 516 aaPredicted RBP16.14■□□□□ 0.17
LIG1-202ENST00000427526 BBOX1O75936 387 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 SEC31AO94979 1220 aaKnown RBP16.14■□□□□ 0.17
LIG1-202ENST00000427526 MCM7P33993 719 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 KRT31Q15323 416 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 CC2D1AQ6P1N0 951 aaPredicted RBP16.14■□□□□ 0.17
LIG1-202ENST00000427526 CNGA4Q8IV77 575 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 LAMB1P07942 1786 aa16.14■□□□□ 0.17
LIG1-202ENST00000427526 HOXA10P31260 410 aaPredicted RBP16.13■□□□□ 0.17
LIG1-202ENST00000427526 ARL6IP4Q66PJ3 421 aaKnown RBP16.13■□□□□ 0.17
LIG1-202ENST00000427526 COBLO75128 1261 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 TBC1D8O95759 1140 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 USP17L8P0C7I0 530 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 RRAGBQ5VZM2 374 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 C15orf52Q6ZUT6 534 aaKnown RBP16.13■□□□□ 0.17
LIG1-202ENST00000427526 PARD6BQ9BYG5 372 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 ARPP21Q9UBL0 812 aaPredicted RBP16.13■□□□□ 0.17
LIG1-202ENST00000427526 KIAA1551Q9HCM1 1747 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 SASH3O75995 380 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 ATP2B4P23634 1241 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 ZNF658Q5TYW1 1059 aaPredicted RBP16.13■□□□□ 0.17
LIG1-202ENST00000427526 CREBRFQ8IUR6 639 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 MCM9Q9NXL9 1143 aa16.13■□□□□ 0.17
LIG1-202ENST00000427526 CCT6AP40227 531 aaKnown RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 TEX35Q5T0J7 233 aa16.12■□□□□ 0.17
LIG1-202ENST00000427526 TBC1D16Q8TBP0 767 aa16.12■□□□□ 0.17
LIG1-202ENST00000427526 SH3RF3Q8TEJ3 882 aaPredicted RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 BAZ2BQ9UIF8 2168 aaKnown RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 KLRG2A4D1S0 409 aaPredicted RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 RNF225M0QZC1 329 aaPredicted RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 LONP1P36776 959 aaKnown RBP16.12■□□□□ 0.17
LIG1-202ENST00000427526 PAK1Q13153 545 aa16.12■□□□□ 0.17
LIG1-202ENST00000427526 GOLGA1Q92805 767 aa16.12■□□□□ 0.17
LIG1-202ENST00000427526 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
LIG1-202ENST00000427526 C6orf229H3BNL8 230 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 TCP11X2Q5H9J9 407 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 ZNF772Q68DY9 489 aaPredicted RBP16.11■□□□□ 0.17
LIG1-202ENST00000427526 CRAMP1Q96RY5 1269 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 SH3GLB2Q9NR46 395 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 TSPY2A6NKD2 308 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 M0R2N6 131 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 N4BP3O15049 544 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 PLSCR1O15162 318 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 ZBTB22O15209 634 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 KIF5CO60282 957 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 RPN1P04843 607 aaKnown RBP16.11■□□□□ 0.17
LIG1-202ENST00000427526 CALML3P27482 149 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 KIF5BP33176 963 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 TXLNAP40222 546 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 COPB1P53618 953 aaKnown RBP16.11■□□□□ 0.17
LIG1-202ENST00000427526 ERVK-24P63145 666 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 SPAG1Q07617 926 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 BLIDQ8IZY5 108 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 ABHD10Q9NUJ1 306 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 FAM205AQ6ZU69 1335 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 TMED8Q6PL24 325 aaPredicted RBP16.11■□□□□ 0.17
LIG1-202ENST00000427526 SRGAP1Q7Z6B7 1085 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 TMTC1Q8IUR5 882 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 NELFBQ8WX92 580 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 IL17RBQ9NRM6 502 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 RMND1Q9NWS8 449 aa16.11■□□□□ 0.17
LIG1-202ENST00000427526 USP5P45974 858 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 VPS16Q9H269 839 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 MKRN1Q9UHC7 482 aaKnown RBP16.1■□□□□ 0.17
LIG1-202ENST00000427526 CDC23Q9UJX2 597 aa16.1■□□□□ 0.17
LIG1-202ENST00000427526 TTF2Q9UNY4 1162 aaKnown RBP16.1■□□□□ 0.17
LIG1-202ENST00000427526 KCNJ18B7U540 433 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms