RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 DPCR1Q3MIW9 517 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NAP1L3Q99457 506 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 DSEQ9UL01 958 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 L1RE1Q9UN81 338 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NMIQ13287 307 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TTC6Q86TZ1 520 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 RETREG2Q8NC44 543 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SUCLA2Q9P2R7 463 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 KIF1BO60333 1816 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CYP2E1P05181 493 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CCR3P51677 355 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 KLHL7Q8IXQ5 586 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ABHD8Q96I13 439 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SH3GLB1Q9Y371 365 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 STAMBPO95630 424 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 POTEIP0CG38 1075 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 OTUD7BQ6GQQ9 843 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TEX9Q8N6V9 391 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 RNF169Q8NCN4 708 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SEC16BQ96JE7 1060 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SOWAHDA6NJG2 315 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 STIM2Q9P246 746 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 EIF4G3O43432 1585 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 USP46P62068 366 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 KCNA2P16389 499 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 MAP3K12Q12852 859 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 MIGA2Q7L4E1 593 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ARHGEF2Q92974 986 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 A6NNZ2 444 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NVLO15381 856 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TUBB8Q3ZCM7 444 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 WDR60Q8WVS4 1066 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PIK3R4Q99570 1358 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ZSCAN9O15535 394 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 STX17P56962 302 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PAK2Q13177 524 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CASP10Q92851 521 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 DDX18Q9NVP1 670 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CARD8Q9Y2G2 431 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TMEM247A6NEH6 219 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 AKR1B10O60218 316 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ALDH1L2Q3SY69 923 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC122Q5T0U0 273 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ZBTB8BQ8NAP8 495 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CXorf38Q8TB03 319 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 JAKMIP2Q96AA8 810 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SMNDC1O75940 238 aaKnown RBP eCLIP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 ARL1P40616 181 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 VSIG1Q86XK7 387 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 SLC35F6Q8N357 371 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 FBXO41Q8TF61 875 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 TMOD1P28289 359 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 NLRP12P59046 1061 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PRCCQ92733 491 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 UBAC1Q9BSL1 405 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 GPHNQ9NQX3 736 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 ARHGAP6O43182 974 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 LCA5LO95447 670 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PEX5P50542 639 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 BEND3Q5T5X7 828 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 TTLL11Q8NHH1 800 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC127Q96BQ5 260 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 AP3B1O00203 1094 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 KRT71Q3SY84 523 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF394Q53GI3 561 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 FUKQ8N0W3 1084 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 TTC30BQ8N4P2 665 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 SMC1BQ8NDV3 1235 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 NMD3Q96D46 503 aaKnown RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 LTV1Q96GA3 475 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 MRPL44Q9H9J2 332 aaKnown RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 WDR91A4D1P6 747 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 SH3BP5O60239 455 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 GMNNO75496 209 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 YEATS4O95619 227 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PI16Q6UXB8 463 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 RFX8Q6ZV50 586 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 TRMT44Q8IYL2 757 aaKnown RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 USP33Q8TEY7 942 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 RAPGEF3O95398 923 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PAFAH1B1P43034 410 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PCYT1AP49585 367 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 DTX3LQ8TDB6 740 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 HPS3Q969F9 1004 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 KLHL29Q96CT2 875 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 CDK5RAP3Q96JB5 506 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 LAMC1P11047 1609 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF713Q8N859 430 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 RBM17Q96I25 401 aaKnown RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 MKS1Q9NXB0 559 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 RCN2Q14257 317 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 C6orf183Q5T699 404 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 CCNI2Q6ZMN8 369 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-212ENST00000423061 TRIM22Q8IYM9 498 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 LINGO3P0C6S8 592 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 SARM1Q6SZW1 724 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 RUFY4Q6ZNE9 571 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 PPFIBP2Q8ND30 876 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 UBXN6Q9BZV1 441 aa3.75□□□□□ -1.81
SYNE1-212ENST00000423061 A6NJR5 290 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms