RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 SYT10Q6XYQ8 523 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 CERS5Q8N5B7 392 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 TBC1D22AQ8WUA7 517 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 RRP36Q96EU6 259 aaKnown RBP12.41□□□□□ -0.42
DDX56-203ENST00000421223 MED15Q96RN5 788 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 PCDHA6Q9UN73 950 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 PCDHA8Q9Y5H6 950 aa12.41□□□□□ -0.42
DDX56-203ENST00000421223 SLC16A2P36021 539 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 E4F1Q66K89 784 aaPredicted RBP12.4□□□□□ -0.42
DDX56-203ENST00000421223 DDX4Q9NQI0 724 aaKnown RBP12.4□□□□□ -0.42
DDX56-203ENST00000421223 TMEM260Q9NX78 707 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 SCN7AQ01118 1682 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 TEX33O43247 280 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 SARSP49591 514 aaKnown RBP12.4□□□□□ -0.42
DDX56-203ENST00000421223 CCDC96Q2M329 555 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 C16orf86Q6ZW13 317 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 CCDC148Q8NFR7 591 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 PARP3Q9Y6F1 533 aa12.4□□□□□ -0.42
DDX56-203ENST00000421223 VSTM4Q8IW00 320 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 SP8Q8IXZ3 490 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 ZNF710Q8N1W2 664 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 NEDD1Q8NHV4 660 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 CNKSR2Q8WXI2 1034 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 CRAMP1Q96RY5 1269 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 INTS13Q9NVM9 706 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 ATP6V0A2Q9Y487 856 aa12.4□□□□□ -0.43
DDX56-203ENST00000421223 SYNRGQ9UMZ2 1314 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 PALM3A6NDB9 673 aaPredicted RBP12.39□□□□□ -0.43
DDX56-203ENST00000421223 STXBP3O00186 592 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 NFIAQ12857 509 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 CCDC178Q5BJE1 867 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 NLGN1Q8N2Q7 840 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 VPS16Q9H269 839 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 BARHL2Q9NY43 387 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 GDAQ9Y2T3 454 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 ECM29Q5VYK3 1845 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 SRGNP10124 158 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 TECP42680 631 aa12.39□□□□□ -0.43
DDX56-203ENST00000421223 ENOX1Q8TC92 643 aaKnown RBP12.39□□□□□ -0.43
DDX56-203ENST00000421223 HOXA10P31260 410 aaPredicted RBP12.38□□□□□ -0.43
DDX56-203ENST00000421223 TXKP42681 527 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 DPYDQ12882 1025 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 KCTD1Q719H9 257 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 ZFPM1Q8IX07 1006 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 PPP1R13BQ96KQ4 1090 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 C6orf50Q9HD87 102 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 MARCH6O60337 910 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 TRAPPC10P48553 1259 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 TTBK2Q6IQ55 1244 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 KIF18AQ8NI77 898 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 MTRQ99707 1265 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 DESI2Q9BSY9 194 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 DNAI1Q9UI46 699 aa12.38□□□□□ -0.43
DDX56-203ENST00000421223 CHRNA5P30532 468 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 SHROOM1Q2M3G4 852 aaPredicted RBP12.37□□□□□ -0.43
DDX56-203ENST00000421223 TRIML1Q8N9V2 468 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 TBCKQ8TEA7 893 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 COA1Q9GZY4 146 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 SERPINB13Q9UIV8 391 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 A0A1B0GUL6 1792 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 TNNI2P48788 182 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 NT5DC1Q5TFE4 455 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 SPECC1LQ69YQ0 1117 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 GSDMAQ96QA5 445 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 PAXBP1Q9Y5B6 917 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 N4BP3O15049 544 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 NONOQ15233 471 aaKnown RBP eCLIP12.37□□□□□ -0.43
DDX56-203ENST00000421223 SPATA1Q5VX52 437 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 C15orf52Q6ZUT6 534 aaKnown RBP12.37□□□□□ -0.43
DDX56-203ENST00000421223 PPFIBP1Q86W92 1011 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 C2CD5Q86YS7 1000 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 GJA10Q969M2 543 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 BAG1Q99933 345 aaPredicted RBP12.37□□□□□ -0.43
DDX56-203ENST00000421223 TRIM34Q9BYJ4 488 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 TCP11L1Q9NUJ3 509 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 TAB2Q9NYJ8 693 aa12.37□□□□□ -0.43
DDX56-203ENST00000421223 TRIM49BA6NDI0 452 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 RPN1P04843 607 aaKnown RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 NPR1P16066 1061 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 IKQ13123 557 aaPredicted RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 UBE2SQ16763 222 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 CDC42EP5Q6NZY7 148 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 TEKT1Q969V4 418 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 MTMR4Q9NYA4 1195 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 ZNF215Q9UL58 517 aaPredicted RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 CCDC88AQ3V6T2 1871 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 PPP1R3GB7ZBB8 358 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 PDHBP11177 359 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 GNA11P29992 359 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 ALDH1B1P30837 517 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 LONP1P36776 959 aaKnown RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 SNAP25P60880 206 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 FILIP1LQ4L180 1135 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 REXO1Q8N1G1 1221 aaKnown RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 IGSF22Q8N9C0 903 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 CCDC12Q8WUD4 166 aaPredicted RBP12.36□□□□□ -0.43
DDX56-203ENST00000421223 NELFBQ8WX92 580 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 ANKS1AQ92625 1134 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 SH3GLB2Q9NR46 395 aa12.36□□□□□ -0.43
DDX56-203ENST00000421223 ERCC3P19447 782 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms