RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZMYM1Q5SVZ6 1142 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 RASGRP2Q7LDG7 609 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 TACC3Q9Y6A5 838 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 ZNFX1Q9P2E3 1918 aaKnown RBP13.79□□□□□ -0.2
USP4-204ENST00000416417 ERC2O15083 957 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 FOXP2O15409 715 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 ZBED4O75132 1171 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 RARBP10826 455 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 MX1P20591 662 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 SNAP25P60880 206 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 TFAP4Q01664 338 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 PPARAQ07869 468 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 ANKRD45Q5TZF3 282 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 PRPF38AQ8NAV1 312 aaKnown RBP13.79□□□□□ -0.2
USP4-204ENST00000416417 DDX11Q96FC9 970 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 TEX13BQ9BXU2 312 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 NAPBQ9H115 298 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 HOMER2Q9NSB8 354 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 PRKAG2Q9UGJ0 569 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 MTMR7Q9Y216 660 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 CTDP1Q9Y5B0 961 aaPredicted RBP13.79□□□□□ -0.2
USP4-204ENST00000416417 COL6A3P12111 3177 aa13.79□□□□□ -0.2
USP4-204ENST00000416417 TRIM43BA6NCK2 446 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 NMT2O60551 498 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 SNAI1O95863 264 aaPredicted RBP13.78□□□□□ -0.2
USP4-204ENST00000416417 TSPY3P0CV98 308 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 TSPY8P0CW00 308 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 VPS53Q5VIR6 699 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 SLFN13Q68D06 897 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 SLC17A8Q8NDX2 589 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 BADQ92934 168 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 TRIM43Q96BQ3 446 aaPredicted RBP13.78□□□□□ -0.2
USP4-204ENST00000416417 FAM161BQ96MY7 647 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 PDLIM7Q9NR12 457 aa13.78□□□□□ -0.2
USP4-204ENST00000416417 ZHX1Q9UKY1 873 aaPredicted RBP13.78□□□□□ -0.2
USP4-204ENST00000416417 SALL3Q9BXA9 1300 aa13.77□□□□□ -0.2
USP4-204ENST00000416417 TMEM232C9JQI7 657 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 TTLL1O95922 423 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 TLE2Q04725 743 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 C9orf50Q5SZB4 431 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 NEDD1Q8NHV4 660 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 MKL1Q969V6 931 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 NACAP1Q9BZK3 213 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 SLC38A10Q9HBR0 1119 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 MTMR10Q9NXD2 777 aa13.77□□□□□ -0.21
USP4-204ENST00000416417 DIS3Q9Y2L1 958 aaKnown RBP13.77□□□□□ -0.21
USP4-204ENST00000416417 DDX49Q9Y6V7 483 aaKnown RBP13.77□□□□□ -0.21
USP4-204ENST00000416417 PLXNA1Q9UIW2 1896 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 DNAJC25-GNG10A0A024R161 153 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 MYADML2A6NDP7 307 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 ADCY6O43306 1168 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 BMP3P12645 472 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 MCCP23508 829 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 ITGB8P26012 769 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 PDE4BQ07343 736 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 SHHQ15465 462 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 FGD4Q96M96 766 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 ZNF287Q9HBT7 754 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 FEM1BQ9UK73 627 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 PHF24Q9UPV7 400 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 CNPY2Q9Y2B0 182 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 MYH4Q9Y623 1939 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 LAMA2P24043 3122 aaKnown RBP13.76□□□□□ -0.21
USP4-204ENST00000416417 LTBP2Q14767 1821 aa13.76□□□□□ -0.21
USP4-204ENST00000416417 A0A1W2PQ45 241 aaPredicted RBP13.75□□□□□ -0.21
USP4-204ENST00000416417 A0A1W2PQY0 241 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 AKR1A1P14550 325 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 COPB2P35606 906 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 CNTN2Q02246 1040 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 IKQ13123 557 aaPredicted RBP13.75□□□□□ -0.21
USP4-204ENST00000416417 SNX17Q15036 470 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 LRRFIP1Q32MZ4 808 aaKnown RBP13.75□□□□□ -0.21
USP4-204ENST00000416417 KCTD1Q719H9 257 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 ANKRD35Q8N283 1001 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 GMCL1P1Q8NEA9 526 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 AGBL1Q96MI9 1066 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 SMCHD1A6NHR9 2005 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 SYNRGQ9UMZ2 1314 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 PLIN4Q96Q06 1357 aa13.75□□□□□ -0.21
USP4-204ENST00000416417 PQBP1O60828 265 aaKnown RBP13.74□□□□□ -0.21
USP4-204ENST00000416417 ADAMTS4O75173 837 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 PTGS1P23219 599 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 CCDC174Q6PII3 467 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 RNF180Q86T96 592 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 FAM227BQ96M60 508 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 YTHDC1Q96MU7 727 aaKnown RBP13.74□□□□□ -0.21
USP4-204ENST00000416417 IL17RBQ9NRM6 502 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.74□□□□□ -0.21
USP4-204ENST00000416417 NRBP1Q9UHY1 535 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 STX8Q9UNK0 236 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP4-204ENST00000416417 TSPY2A6NKD2 308 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 ATP2A1O14983 1001 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 SLC3A2P08195 630 aaKnown RBP13.74□□□□□ -0.21
USP4-204ENST00000416417 EPHB4P54760 987 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 ACVR2BQ13705 512 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 KCNA10Q16322 511 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 GPR153Q6NV75 609 aa13.74□□□□□ -0.21
USP4-204ENST00000416417 ZBTB47Q9UFB7 747 aaPredicted RBP13.74□□□□□ -0.21
USP4-204ENST00000416417 FAM184BQ9ULE4 1060 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms