RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 TSPOAP1O95153 1857 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 RAPGEF6Q8TEU7 1601 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 A0A0D9SFI3 127 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ARHGAP45Q92619 1136 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 MRPL11Q9Y3B7 192 aaKnown RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 TTC36A6NLP5 189 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CLGNO14967 610 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CDC25AP30304 524 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SMAD1Q15797 465 aaKnown RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 VPS52Q8N1B4 723 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 MARCH10Q8NA82 808 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SMYD2Q9NRG4 433 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 PIM2Q9P1W9 311 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SYNDIG1LA6NDD5 238 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 EIF2AK2P19525 551 aaKnown RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 NUMBP49757 651 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 PAK1Q13153 545 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 HLFQ16534 295 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SPECC1LQ69YQ0 1117 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC77Q9BR77 488 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ERVV-2B6SEH9 535 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ATF7P17544 494 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC157Q569K6 752 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 FLAD1Q8NFF5 587 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF341Q9BYN7 854 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SBNO1A3KN83 1393 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 KBTBD3Q8NAB2 608 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 MTUS1Q9ULD2 1270 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 REXO1Q8N1G1 1221 aaKnown RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 POLR3EQ9NVU0 708 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 MAP3K15Q6ZN16 1313 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 AKR1B15C9JRZ8 316 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TLR3O15455 904 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 GIGYF1O75420 1035 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ADKP55263 362 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF365Q70YC5 407 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 STIM2Q9P246 746 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 CALCOCO2Q13137 446 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 PPM1KQ8N3J5 372 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TBC1D22AQ8WUA7 517 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TMEM191BP0C7N4 346 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ADCY1Q08828 1119 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 NXNQ6DKJ4 435 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TBC1D31Q96DN5 1066 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 SCYL1Q96KG9 808 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 DKC1O60832 514 aaKnown RBP eCLIP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 IFNB1P01574 187 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 PDIA4P13667 645 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ATP2A2P16615 1042 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 CD58P19256 250 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 MYLK4Q86YV6 388 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 GJA10Q969M2 543 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 MXD3Q9BW11 206 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ARPP21Q9UBL0 812 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TNKSO95271 1327 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TRIM50Q86XT4 487 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 BAG1Q99933 345 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 SLF1Q9BQI6 1058 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ELP1O95163 1332 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 POTEB2H3BUK9 544 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 LRRC43Q8N309 656 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 PIGSQ96S52 555 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 NAP1L4Q99733 375 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 SYNRGQ9UMZ2 1314 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 DUOX2Q9NRD8 1548 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 SUPT20HL1Q3ZLR7 823 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 RNF217Q8TC41 542 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 NOX5Q96PH1 765 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 ERBB3P21860 1342 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 PRPHP41219 470 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 MTX1Q13505 466 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 KRT25Q7Z3Z0 450 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 CTAGE3PQ8IX95 158 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 TTLL6Q8N841 843 aa8.62□□□□□ -1.03
SCN9A-201ENST00000303354 CFAP65Q6ZU64 1925 aaKnown RBP8.62□□□□□ -1.03
SCN9A-201ENST00000303354 XPAP23025 273 aaPredicted RBP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 CASP2P42575 452 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 IL1RL1Q01638 556 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 GLYCTKQ8IVS8 523 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 MCUQ8NE86 351 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 PIGBQ92521 554 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 UBN1Q9NPG3 1134 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 OLA1Q9NTK5 396 aaKnown RBP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ESYT2A0FGR8 921 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 DYNLT1P63172 113 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ANKRD42Q8N9B4 389 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 VPS37BQ9H9H4 285 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 KIAA1024Q9UPX6 916 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 PCDHA1Q9Y5I3 950 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 KLHL30Q0D2K2 578 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 TBC1D9BQ66K14 1250 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 FAM8A1Q9UBU6 413 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 COL17A1Q9UMD9 1497 aaPredicted RBP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ARHGEF10O15013 1369 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 NRBP2Q9NSY0 501 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 ZHX2Q9Y6X8 837 aa8.61□□□□□ -1.03
SCN9A-201ENST00000303354 STK10O94804 968 aaKnown RBP8.61□□□□□ -1.03
SCN9A-201ENST00000303354 CACNB2Q08289 660 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 1002.2 ms