RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MX1P20591 662 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 PDE4BQ07343 736 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 ZNF792Q3KQV3 632 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 TRIM60Q495X7 471 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 GPR153Q6NV75 609 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 SLC39A5Q6ZMH5 540 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 Q7L0L9 218 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 CPXCR1Q8N123 301 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 NRBP1Q9UHY1 535 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 CNPY2Q9Y2B0 182 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 ZBED4O75132 1171 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 TTLL1O95922 423 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 AKR1A1P14550 325 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 ADCYAP1R1P41586 468 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 RRP1P56182 461 aaKnown RBP15.19■□□□□ 0.02
CD44-203ENST00000278386 RNF180Q86T96 592 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 PRPF38AQ8NAV1 312 aaKnown RBP15.19■□□□□ 0.02
CD44-203ENST00000278386 LENG1Q96BZ8 264 aaPredicted RBP15.19■□□□□ 0.02
CD44-203ENST00000278386 DDX11Q96FC9 970 aa15.19■□□□□ 0.02
CD44-203ENST00000278386 DIS3Q9Y2L1 958 aaKnown RBP15.19■□□□□ 0.02
CD44-203ENST00000278386 LRRC37A2A6NM11 1700 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 PGK1P00558 417 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 TAL1P17542 331 aaPredicted RBP15.18■□□□□ 0.02
CD44-203ENST00000278386 PPARAQ07869 468 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 IKQ13123 557 aaPredicted RBP15.18■□□□□ 0.02
CD44-203ENST00000278386 ZMYM1Q5SVZ6 1142 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 RAVER2Q9HCJ3 691 aaKnown RBP15.18■□□□□ 0.02
CD44-203ENST00000278386 MTMR4Q9NYA4 1195 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 FEM1BQ9UK73 627 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 ZHX1Q9UKY1 873 aaPredicted RBP15.18■□□□□ 0.02
CD44-203ENST00000278386 COL6A3P12111 3177 aa15.18■□□□□ 0.02
CD44-203ENST00000278386 SNX17Q15036 470 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 SLFN13Q68D06 897 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 CCDC129Q6ZRS4 1044 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 SLC17A8Q8NDX2 589 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 GMCL1P1Q8NEA9 526 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 PDLIM7Q9NR12 457 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 HOMER2Q9NSB8 354 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 RIPK3Q9Y572 518 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 SYNGAP1Q96PV0 1343 aa15.17■□□□□ 0.02
CD44-203ENST00000278386 ZNF865P0CJ78 1059 aaPredicted RBP15.16■□□□□ 0.02
CD44-203ENST00000278386 BMP3P12645 472 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 TFAP4Q01664 338 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 ANKRD35Q8N283 1001 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 NEDD1Q8NHV4 660 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 CHMP4CQ96CF2 233 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 SLC38A10Q9HBR0 1119 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 SYNPO2Q9UMS6 1093 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 PHF24Q9UPV7 400 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 SYNRGQ9UMZ2 1314 aa15.16■□□□□ 0.02
CD44-203ENST00000278386 A0A1W2PQ45 241 aaPredicted RBP15.15■□□□□ 0.02
CD44-203ENST00000278386 A0A1W2PQY0 241 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 TSPY2A6NKD2 308 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 TMEM232C9JQI7 657 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 ATP2A1O14983 1001 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 STAT2P52630 851 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 ANKRD45Q5TZF3 282 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 MSL3Q8N5Y2 521 aaKnown RBP15.15■□□□□ 0.02
CD44-203ENST00000278386 MKL1Q969V6 931 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 CRBNQ96SW2 442 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 FBXO40Q9UH90 709 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 FAM184BQ9ULE4 1060 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 STX8Q9UNK0 236 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 LCTP09848 1927 aa15.15■□□□□ 0.02
CD44-203ENST00000278386 PQBP1O60828 265 aaKnown RBP15.14■□□□□ 0.01
CD44-203ENST00000278386 SLC1A4P43007 532 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 OAZ1P54368 228 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 CTDSPL2Q05D32 466 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 PPP4R3BQ5MIZ7 849 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 SH3RF1Q7Z6J0 888 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 CHST13Q8NET6 341 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 BADQ92934 168 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.14■□□□□ 0.01
CD44-203ENST00000278386 MTMR7Q9Y216 660 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 SALL3Q9BXA9 1300 aa15.14■□□□□ 0.01
CD44-203ENST00000278386 DNAJC25-GNG10A0A024R161 153 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 ADAMTS4O75173 837 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 CLTBP09497 229 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 TLE2Q04725 743 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 C1orf53Q5VUE5 145 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 ZNF467Q7Z7K2 595 aaPredicted RBP15.13■□□□□ 0.01
CD44-203ENST00000278386 FAM160B2Q86V87 743 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 GMCL1Q96IK5 515 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 ACAD9Q9H845 621 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 STARD7Q9NQZ5 370 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 TOMM22Q9NS69 142 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 MTMR10Q9NXD2 777 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 LAMA4Q16363 1823 aa15.13■□□□□ 0.01
CD44-203ENST00000278386 LAMA2P24043 3122 aaKnown RBP15.12■□□□□ 0.01
CD44-203ENST00000278386 TRIM43BA6NCK2 446 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 SNAI1O95863 264 aaPredicted RBP15.12■□□□□ 0.01
CD44-203ENST00000278386 C6orf222P0C671 652 aaPredicted RBP15.12■□□□□ 0.01
CD44-203ENST00000278386 FDX1P10109 184 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 MCCP23508 829 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 C9orf50Q5SZB4 431 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 ZNF697Q5TEC3 545 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 MAMDC4Q6UXC1 1216 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 KCTD1Q719H9 257 aa15.12■□□□□ 0.01
CD44-203ENST00000278386 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.12■□□□□ 0.01
CD44-203ENST00000278386 ARMCX2Q7L311 632 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms