RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ALDH1B1P30837 517 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 TNNI2P48788 182 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 CCZ1BP86790 482 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 CCZ1P86791 482 aaPredicted RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 USP49Q70CQ1 688 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 ZNF710Q8N1W2 664 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 VPS16Q9H269 839 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 USP40Q9NVE5 1235 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 IDEP14735 1019 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 ADKP55263 362 aaKnown RBP18.29■□□□□ 0.52
CTCF-201ENST00000264010 PKN1Q16512 942 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 PTF1AQ7RTS3 328 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 SAMSN1Q9NSI8 373 aaKnown RBP18.29■□□□□ 0.52
CTCF-201ENST00000264010 TMOD2Q9NZR1 351 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 LAD1O00515 517 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 TRIM37O94972 964 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 CABP7Q86V35 215 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 FCHSD1Q86WN1 690 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 TACC3Q9Y6A5 838 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 RPN1P04843 607 aaKnown RBP18.29■□□□□ 0.52
CTCF-201ENST00000264010 PPP4CP60510 307 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 MCM6Q14566 821 aa18.29■□□□□ 0.52
CTCF-201ENST00000264010 KARSQ15046 597 aaKnown RBP18.29■□□□□ 0.52
CTCF-201ENST00000264010 FNBP4Q8N3X1 1017 aaPredicted RBP18.29■□□□□ 0.52
CTCF-201ENST00000264010 ITGB4P16144 1822 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 XIRP1Q702N8 1843 aaKnown RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 BICDL2A1A5D9 508 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 SMIM22K7EJ46 135 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ADCY7P51828 1080 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ETF1P62495 437 aaKnown RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 UBXN1Q04323 297 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 E2F4Q16254 413 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 NLGN1Q8N2Q7 840 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ZNF397Q8NF99 534 aaPredicted RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 SECISBP2LQ93073 1101 aaKnown RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 NUP98P52948 1817 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 OR52Z1P0C646 297 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ZSCAN20P17040 1043 aaPredicted RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 KIF4BQ2VIQ3 1234 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 KRT79Q5XKE5 535 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ARMCX5Q6P1M9 558 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 MICALL1Q8N3F8 863 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 ACTN4O43707 911 aaKnown RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 STX10O60499 249 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 MRPL12P52815 198 aaKnown RBP18.28■□□□□ 0.52
CTCF-201ENST00000264010 NCAPHQ15003 741 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 SLC27A3Q5K4L6 730 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 NEK8Q86SG6 692 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 TSG101Q99816 390 aa18.28■□□□□ 0.52
CTCF-201ENST00000264010 PPP1R2P41236 205 aa18.27■□□□□ 0.52
CTCF-201ENST00000264010 SMYD4Q8IYR2 804 aaPredicted RBP18.27■□□□□ 0.52
CTCF-201ENST00000264010 TRIM14Q14142 442 aa18.27■□□□□ 0.52
CTCF-201ENST00000264010 STAG2Q8N3U4 1231 aa18.27■□□□□ 0.52
CTCF-201ENST00000264010 TEKT1Q969V4 418 aa18.27■□□□□ 0.52
CTCF-201ENST00000264010 ACBD3Q9H3P7 528 aa18.27■□□□□ 0.52
CTCF-201ENST00000264010 USP27XA6NNY8 438 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 TTC31Q49AM3 519 aaPredicted RBP18.27■□□□□ 0.51
CTCF-201ENST00000264010 USP17L2Q6R6M4 530 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 DPF2Q92785 391 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 COA1Q9GZY4 146 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 UBA5Q9GZZ9 404 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 TAB2Q9NYJ8 693 aa18.27■□□□□ 0.51
CTCF-201ENST00000264010 DOT1LQ8TEK3 1739 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 NID2Q14112 1375 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 TMEM232C9JQI7 657 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 PDE6BP35913 854 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 TXKP42681 527 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 IRX5P78411 483 aaPredicted RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 PTPN21Q16825 1174 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 KRT27Q7Z3Y8 459 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 NEDD1Q8NHV4 660 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 NAA15Q9BXJ9 866 aaKnown RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 TANGO6Q9C0B7 1094 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 ZHX3Q9H4I2 956 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 SAMD1Q6SPF0 538 aaPredicted RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 BIN2Q9UBW5 565 aaPredicted RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 PHLPP1O60346 1717 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 BRD2P25440 801 aaKnown RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 CASP1P29466 404 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 PDE4DQ08499 809 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 GOLGA8FQ08AF8 430 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 GOLGA8DPQ0D2H9 430 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 DOK7Q18PE1 504 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 SV2BQ7L1I2 683 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 KIAA1328Q86T90 577 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 ZNF215Q9UL58 517 aaPredicted RBP18.26■□□□□ 0.51
CTCF-201ENST00000264010 PPP2R2CQ9Y2T4 447 aa18.26■□□□□ 0.51
CTCF-201ENST00000264010 ABCA3Q99758 1704 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 CAPN2P17655 700 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 CDC25AP30304 524 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 EPS15P42566 896 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 FRMPD2Q68DX3 1309 aaPredicted RBP18.25■□□□□ 0.51
CTCF-201ENST00000264010 LRRC47Q8N1G4 583 aaKnown RBP18.25■□□□□ 0.51
CTCF-201ENST00000264010 BARHL2Q9NY43 387 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 LRWD1Q9UFC0 647 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 H7C1D1 291 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 KIAA0754O94854 1291 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 ELF2Q15723 593 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 ASPRV1Q53RT3 343 aa18.25■□□□□ 0.51
CTCF-201ENST00000264010 CCDC51Q96ER9 411 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms