RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 GJD2Q9UKL4 321 aa11.09□□□□□ -0.63
PHGDH-228ENST00000641847 NEDD4P46934 1319 aa11.09□□□□□ -0.63
PHGDH-228ENST00000641847 MYH8P13535 1937 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 ALPK3Q96L96 1907 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 HLA-DOAP06340 250 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 PLCD1P51178 756 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 SMAD3P84022 425 aaKnown RBP11.08□□□□□ -0.64
PHGDH-228ENST00000641847 MAPK8IP2Q13387 824 aaPredicted RBP11.08□□□□□ -0.64
PHGDH-228ENST00000641847 TSGA10IPQ3SY00 556 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 TREML2Q5T2D2 321 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 TTC6Q86TZ1 520 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 IL27Q8NEV9 243 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 STAG1Q8WVM7 1258 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 KIF2CQ99661 725 aa11.08□□□□□ -0.64
PHGDH-228ENST00000641847 DHX36Q9H2U1 1008 aaKnown RBP11.08□□□□□ -0.64
PHGDH-228ENST00000641847 RNF41Q9H4P4 317 aaPredicted RBP11.08□□□□□ -0.64
PHGDH-228ENST00000641847 DDTLA6NHG4 134 aaPredicted RBP11.07□□□□□ -0.64
PHGDH-228ENST00000641847 CASTP20810 708 aaKnown RBP11.07□□□□□ -0.64
PHGDH-228ENST00000641847 PSMA5P28066 241 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 RGS2P41220 211 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 IRX3P78415 501 aaPredicted RBP11.07□□□□□ -0.64
PHGDH-228ENST00000641847 ADCK5Q3MIX3 580 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 AKNAD1Q5T1N1 836 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 MFSD6Q6ZSS7 791 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 RALYLQ86SE5 291 aaKnown RBP11.07□□□□□ -0.64
PHGDH-228ENST00000641847 DYNLL2Q96FJ2 89 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 UPF3BQ9BZI7 483 aaKnown RBP11.07□□□□□ -0.64
PHGDH-228ENST00000641847 TOMM22Q9NS69 142 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 TACC3Q9Y6A5 838 aa11.07□□□□□ -0.64
PHGDH-228ENST00000641847 MSCO60682 206 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 PRDM1O75626 825 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 MAPK4P31152 587 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 CACNB2Q08289 660 aaPredicted RBP11.06□□□□□ -0.64
PHGDH-228ENST00000641847 TRDNQ13061 729 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 SPP2Q13103 211 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 RABEP1Q15276 862 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 RRP12Q5JTH9 1297 aaKnown RBP11.06□□□□□ -0.64
PHGDH-228ENST00000641847 C16orf86Q6ZW13 317 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 SLC44A5Q8NCS7 719 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 ZNF280CQ8ND82 737 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 GPRC5AQ8NFJ5 357 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 NCOA7Q8NI08 942 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 NEK1Q96PY6 1258 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 TRIM34Q9BYJ4 488 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 TM6SF1Q9BZW5 370 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 ASCC2Q9H1I8 757 aaPredicted RBP11.06□□□□□ -0.64
PHGDH-228ENST00000641847 EHD4Q9H223 541 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 CNNM2Q9H8M5 875 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 INCENPQ9NQS7 918 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 PI4KBQ9UBF8 816 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 SERPINB13Q9UIV8 391 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.06□□□□□ -0.64
PHGDH-228ENST00000641847 BDP1A6H8Y1 2624 aa11.06□□□□□ -0.64
PHGDH-228ENST00000641847 B4E1Z4 1266 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 ORC4O43929 436 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 PCP11498 1178 aaKnown RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 CPA1P15085 419 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 ATN1P54259 1190 aaPredicted RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 MAP3K10Q02779 954 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 GABPAQ06546 454 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 PDE4BQ07343 736 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 COL9A3Q14050 684 aaPredicted RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 SHHQ15465 462 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 MFSD14CQ5VZR4 134 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 LHX8Q68G74 356 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 BLOC1S2Q6QNY1 142 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 MB21D2Q8IYB1 491 aaPredicted RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 CRACR2BQ8N4Y2 399 aaPredicted RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 ATXN2LQ8WWM7 1075 aaKnown RBP11.05□□□□□ -0.64
PHGDH-228ENST00000641847 KRT23Q9C075 422 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 AS3MTQ9HBK9 375 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 ZNF287Q9HBT7 754 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 ZSWIM6Q9HCJ5 1215 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 MORF4L1Q9UBU8 362 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 SWAP70Q9UH65 585 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 CYP46A1Q9Y6A2 500 aa11.05□□□□□ -0.64
PHGDH-228ENST00000641847 FAM196BA6NMK8 535 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 RANBP6O60518 1105 aaKnown RBP11.04□□□□□ -0.64
PHGDH-228ENST00000641847 HMGB1P09429 215 aaKnown RBP11.04□□□□□ -0.64
PHGDH-228ENST00000641847 FGRP09769 529 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 SLURP2P0DP57 97 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 RPS6KB1P23443 525 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 CCND3P30281 292 aaPredicted RBP11.04□□□□□ -0.64
PHGDH-228ENST00000641847 SHMT1P34896 483 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 CDK8P49336 464 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 HMGCS2P54868 508 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 RUFY3Q7L099 469 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 GTF3C2Q8WUA4 911 aaPredicted RBP11.04□□□□□ -0.64
PHGDH-228ENST00000641847 ESR2Q92731 530 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 DNAJC18Q9H819 358 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 MKNK2Q9HBH9 465 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 PRDM5Q9NQX1 630 aaPredicted RBP11.04□□□□□ -0.64
PHGDH-228ENST00000641847 TMOD4Q9NZQ9 345 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 ATP11BQ9Y2G3 1177 aa11.04□□□□□ -0.64
PHGDH-228ENST00000641847 DNM1LO00429 736 aa11.03□□□□□ -0.64
PHGDH-228ENST00000641847 PRC1O43663 620 aa11.03□□□□□ -0.64
PHGDH-228ENST00000641847 TBC1D12O60347 775 aa11.03□□□□□ -0.64
PHGDH-228ENST00000641847 KDM4AO75164 1064 aa11.03□□□□□ -0.64
PHGDH-228ENST00000641847 RASA1P20936 1047 aa11.03□□□□□ -0.64
PHGDH-228ENST00000641847 CNGA1P29973 690 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms