RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	GPCPD1	Q9NPB8	672 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	PHIP	Q8WWQ0	1821 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	UBE2Q2L	H0YL09	131 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	CYTH3	O43739	400 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	PTMS	P20962	102 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	SLC1A4	P43007	532 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	CCDC96	Q2M329	555 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	SLC35G1	Q2M3R5	365 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	EAPP	Q56P03	285 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	OTUD7B	Q6GQQ9	843 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	FERMT3	Q86UX7	667 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	SCYL3	Q8IZE3	742 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	ACER1	Q8TDN7	264 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	KLRG1	Q96E93	195 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	SH3GLB2	Q9NR46	395 aa		13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN6-223	ENST00000637823	hCG_1642624	A0A1W2PR95	340 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	ADM5	C9JUS6	153 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	RAD21	O60216	631 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	PPP1R12B	O60237	982 aa	Predicted RBP	13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	USP2	O75604	605 aa	Predicted RBP	13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	NDUFB10	O96000	172 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	VEGFA	P15692	232 aa	Predicted RBP	13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	INPP5B	P32019	993 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	NF2	P35240	595 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	SAFB	Q15424	915 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	NOL9	Q5SY16	702 aa	Known RBP	13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	RASGRP2	Q7LDG7	609 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	BRAP	Q7Z569	592 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	WRNIP1	Q96S55	665 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	UBA5	Q9GZZ9	404 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	GJB4	Q9NTQ9	266 aa		13.59	□□□□□ -0.23
CLN6-223	ENST00000637823	SSC5D	A1L4H1	1573 aa		13.58	□□□□□ -0.23
CLN6-223	ENST00000637823	DDX11L8	A8MPP1	907 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	MMP1	P03956	469 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	BMP3	P12645	472 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	U2AF2	P26368	475 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	ECE1	P42892	770 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	KIF23	Q02241	960 aa	Predicted RBP	13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	ATL3	Q6DD88	541 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	TTBK2	Q6IQ55	1244 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	BTNL9	Q6UXG8	535 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	KCTD1	Q719H9	257 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	ADGRF4	Q8IZF3	695 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	PIBF1	Q8WXW3	757 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	WDR18	Q9BV38	432 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	PHF20	Q9BVI0	1012 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	VCPKMT	Q9H867	229 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	JMJD4	Q9H9V9	463 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	AS3MT	Q9HBK9	375 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	VAT1L	Q9HCJ6	419 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	PICK1	Q9NRD5	415 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	SEC63	Q9UGP8	760 aa	Known RBP	13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	CLEC11A	Q9Y240	323 aa		13.58	□□□□□ -0.24
CLN6-223	ENST00000637823	hCG_1984214	I3L0E3	225 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	PLA2G6	O60733	806 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	PTPRA	P18433	802 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	IREB2	P48200	963 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	MAP3K9	P80192	1104 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	DNM1	Q05193	864 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	GNL2	Q13823	731 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	ZNF713	Q8N859	430 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	MTMR8	Q96EF0	704 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	CDCA5	Q96FF9	252 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	ZNF396	Q96N95	335 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	PIGS	Q96S52	555 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	KIAA1683	Q9H0B3	1180 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	FOXP1	Q9H334	677 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	CPVL	Q9H3G5	476 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	RRAGC	Q9HB90	399 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	VPS54	Q9P1Q0	977 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	KCNJ14	Q9UNX9	436 aa		13.57	□□□□□ -0.24
CLN6-223	ENST00000637823	OTOF	Q9HC10	1997 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	PAPPA2	Q9BXP8	1791 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	PNMA6F	A0A0J9YX94	578 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	USP17L10	C9JJH3	530 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	TMEM232	C9JQI7	657 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CALML3	P27482	149 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	USP14	P54578	494 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	KRT85	P78386	507 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CSPP1	Q1MSJ5	1256 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	GALNT17	Q6IS24	598 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	DLK2	Q6UY11	383 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CCDC148	Q8NFR7	591 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CHURC1	Q8WUH1	139 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	LPAR1	Q92633	364 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	BRMS1	Q9HCU9	246 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	BARHL2	Q9NY43	387 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	CFAP45	Q9UL16	551 aa		13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	ISY1	Q9ULR0	285 aa	Known RBP	13.56	□□□□□ -0.24
CLN6-223	ENST00000637823	KIF28P	B7ZC32	967 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	STXBP3	O00186	592 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	KRT2	P35908	639 aa		13.55	□□□□□ -0.24

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