RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 PARP14Q460N5 1801 aa21.48■■□□□ 1.03
CIITA-215ENST00000637439 EEF2P13639 858 aaKnown RBP21.48■■□□□ 1.03
CIITA-215ENST00000637439 TMEM132BQ14DG7 1078 aa21.48■■□□□ 1.03
CIITA-215ENST00000637439 SAMD1Q6SPF0 538 aaPredicted RBP21.48■■□□□ 1.03
CIITA-215ENST00000637439 ADAMTS5Q9UNA0 930 aa21.48■■□□□ 1.03
CIITA-215ENST00000637439 SLC4A4Q9Y6R1 1079 aa21.48■■□□□ 1.03
CIITA-215ENST00000637439 A0A0C4DFX4 3053 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 CYP2D7A0A087X1C5 515 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 COPB2P35606 906 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 SLFNL1Q499Z3 407 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 ANO1Q5XXA6 986 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 MMP19Q99542 508 aa21.47■■□□□ 1.03
CIITA-215ENST00000637439 ZNFX1Q9P2E3 1918 aaKnown RBP21.47■■□□□ 1.03
CIITA-215ENST00000637439 POTEB2H3BUK9 544 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 MYCNP04198 464 aaPredicted RBP21.46■■□□□ 1.03
CIITA-215ENST00000637439 KCTD2Q14681 263 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 SNX17Q15036 470 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 PRAMEF19Q5SWL8 479 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 C1orf53Q5VUE5 145 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
CIITA-215ENST00000637439 RIOX2Q8IUF8 465 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 LRRCC1Q9C099 1032 aa21.46■■□□□ 1.03
CIITA-215ENST00000637439 ARPP21Q9UBL0 812 aaPredicted RBP21.46■■□□□ 1.03
CIITA-215ENST00000637439 DIS3Q9Y2L1 958 aaKnown RBP21.46■■□□□ 1.03
CIITA-215ENST00000637439 LTBP2Q14767 1821 aa21.45■■□□□ 1.03
CIITA-215ENST00000637439 LRRC41Q15345 812 aa21.45■■□□□ 1.02
CIITA-215ENST00000637439 CTR9Q6PD62 1173 aa21.45■■□□□ 1.02
CIITA-215ENST00000637439 PPP1R9AQ9ULJ8 1098 aa21.45■■□□□ 1.02
CIITA-215ENST00000637439 COL11A1P12107 1806 aaPredicted RBP21.45■■□□□ 1.02
CIITA-215ENST00000637439 VWA5AO00534 786 aa21.44■■□□□ 1.02
CIITA-215ENST00000637439 RARBP10826 455 aa21.44■■□□□ 1.02
CIITA-215ENST00000637439 STAT3P40763 770 aa21.44■■□□□ 1.02
CIITA-215ENST00000637439 ADCYAP1R1P41586 468 aa21.44■■□□□ 1.02
CIITA-215ENST00000637439 TINF2Q9BSI4 451 aa21.44■■□□□ 1.02
CIITA-215ENST00000637439 PRDM5Q9NQX1 630 aaPredicted RBP21.44■■□□□ 1.02
CIITA-215ENST00000637439 SMIM22K7EJ46 135 aa21.43■■□□□ 1.02
CIITA-215ENST00000637439 TRIM60Q495X7 471 aa21.43■■□□□ 1.02
CIITA-215ENST00000637439 FAM47AQ5JRC9 791 aa21.43■■□□□ 1.02
CIITA-215ENST00000637439 PUS7LQ9H0K6 701 aaKnown RBP21.43■■□□□ 1.02
CIITA-215ENST00000637439 XPNPEP3Q9NQH7 507 aa21.43■■□□□ 1.02
CIITA-215ENST00000637439 FBXO28Q9NVF7 368 aa21.43■■□□□ 1.02
CIITA-215ENST00000637439 RAD21O60216 631 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 LAMA2P24043 3122 aaKnown RBP21.42■■□□□ 1.02
CIITA-215ENST00000637439 SBK1Q52WX2 424 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 GIMAP6Q6P9H5 292 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 RNF180Q86T96 592 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 FERMT2Q96AC1 680 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 ZNF214Q9UL59 606 aaPredicted RBP21.42■■□□□ 1.02
CIITA-215ENST00000637439 PHF24Q9UPV7 400 aa21.42■■□□□ 1.02
CIITA-215ENST00000637439 PLXNA1Q9UIW2 1896 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 ROBO3Q96MS0 1386 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 CHGBP05060 677 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 PGK2P07205 417 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 ZNF792Q3KQV3 632 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 FAM83BQ5T0W9 1011 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 ZNF697Q5TEC3 545 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 STRBPQ96SI9 672 aaKnown RBP21.41■■□□□ 1.02
CIITA-215ENST00000637439 MKNK2Q9HBH9 465 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 PDLIM7Q9NR12 457 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 ECHDC1Q9NTX5 307 aa21.41■■□□□ 1.02
CIITA-215ENST00000637439 MSL3Q8N5Y2 521 aaKnown RBP21.4■■□□□ 1.02
CIITA-215ENST00000637439 REPS2Q8NFH8 660 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 BADQ92934 168 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 NYAP2Q9P242 653 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 RCAN3Q9UKA8 241 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 CNPY2Q9Y2B0 182 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 TACC3Q9Y6A5 838 aa21.4■■□□□ 1.02
CIITA-215ENST00000637439 AKR1A1P14550 325 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 SHHQ15465 462 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 GPATCH3Q96I76 525 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 GUCD1Q96NT3 240 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 SLF1Q9BQI6 1058 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.39■■□□□ 1.01
CIITA-215ENST00000637439 TEX13BQ9BXU2 312 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 SMCHD1A6NHR9 2005 aa21.39■■□□□ 1.01
CIITA-215ENST00000637439 GREB1LQ9C091 1923 aaPredicted RBP21.39■■□□□ 1.01
CIITA-215ENST00000637439 RASA1P20936 1047 aa21.38■■□□□ 1.01
CIITA-215ENST00000637439 TLE2Q04725 743 aa21.38■■□□□ 1.01
CIITA-215ENST00000637439 KBTBD3Q8NAB2 608 aa21.38■■□□□ 1.01
CIITA-215ENST00000637439 PRPF38AQ8NAV1 312 aaKnown RBP21.38■■□□□ 1.01
CIITA-215ENST00000637439 ZNF287Q9HBT7 754 aa21.38■■□□□ 1.01
CIITA-215ENST00000637439 CUL9Q8IWT3 2517 aa21.38■■□□□ 1.01
CIITA-215ENST00000637439 TRIM43BA6NCK2 446 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 GSG1L2A8MUP6 293 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 F5H6K3 240 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 SMARCA5O60264 1052 aaPredicted RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 PGK1P00558 417 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 ZFYP08048 801 aaPredicted RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 ZNF865P0CJ78 1059 aaPredicted RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 KLRC3Q07444 240 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 SNRNP48Q6IEG0 339 aaKnown RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 APPBP2Q92624 585 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 TRIM43Q96BQ3 446 aaPredicted RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 DDX11Q96FC9 970 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 FAM161BQ96MY7 647 aa21.37■■□□□ 1.01
CIITA-215ENST00000637439 TSEN34Q9BSV6 310 aaKnown RBP21.37■■□□□ 1.01
CIITA-215ENST00000637439 SYNGAP1Q96PV0 1343 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 MINDY4BA8MYZ0 360 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 CLTBP09497 229 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 TAL1P17542 331 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms