RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TAOK2Q9UL54 1235 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 FRMPD2Q68DX3 1309 aaPredicted RBP15.91■□□□□ 0.14
LINC00540-202ENST00000616974 SLFN13Q68D06 897 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 OTOP1Q7RTM1 612 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 RNF41Q9H4P4 317 aaPredicted RBP15.91■□□□□ 0.14
LINC00540-202ENST00000616974 TRIM17Q9Y577 477 aa15.91■□□□□ 0.14
LINC00540-202ENST00000616974 GOLGA8HP0CJ92 632 aa15.9■□□□□ 0.14
LINC00540-202ENST00000616974 SEC23AQ15436 765 aa15.9■□□□□ 0.14
LINC00540-202ENST00000616974 ZSCAN10Q96SZ4 725 aaPredicted RBP15.9■□□□□ 0.14
LINC00540-202ENST00000616974 OSBPP22059 807 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 SLC16A2P36021 539 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 PSMC4P43686 418 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 RAB11FIP4Q86YS3 637 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 MCOLN1Q9GZU1 580 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 EFCC1Q9HA90 598 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 GOPCQ9HD26 462 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 GABRQQ9UN88 632 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 RANBP2P49792 3224 aaKnown RBP15.89■□□□□ 0.13
LINC00540-202ENST00000616974 MCM3APO60318 1980 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 WDR46O15213 610 aaKnown RBP15.89■□□□□ 0.13
LINC00540-202ENST00000616974 LPAR1Q92633 364 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 TCP11L1Q9NUJ3 509 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 PNMA3Q9UL41 463 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 ISY1Q9ULR0 285 aaKnown RBP15.89■□□□□ 0.13
LINC00540-202ENST00000616974 CEP290O15078 2479 aa15.89■□□□□ 0.13
LINC00540-202ENST00000616974 LAMA2P24043 3122 aaKnown RBP15.89■□□□□ 0.13
LINC00540-202ENST00000616974 DSG3P32926 999 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 ERVK-9P63128 1117 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 ERVK-24P63145 666 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 FAM110CQ1W6H9 321 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 NOM1Q5C9Z4 860 aaKnown RBP15.88■□□□□ 0.13
LINC00540-202ENST00000616974 CASC1Q6TDU7 716 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 GMCL1P1Q8NEA9 526 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 SH2D4AQ9H788 454 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 TMEM232C9JQI7 657 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 COG2Q14746 738 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 TMEM132BQ14DG7 1078 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 MYL10Q9BUA6 226 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 KRT23Q9C075 422 aa15.88■□□□□ 0.13
LINC00540-202ENST00000616974 PDHBP11177 359 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 C8orf34Q49A92 452 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 LBX2Q6XYB7 198 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 REPS2Q8NFH8 660 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 KIFC2Q96AC6 838 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 USP26Q9BXU7 913 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 GPCPD1Q9NPB8 672 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 SNX14Q9Y5W7 946 aa15.87■□□□□ 0.13
LINC00540-202ENST00000616974 TOP1P11387 765 aaKnown RBP15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PCP11498 1178 aaKnown RBP15.86■□□□□ 0.13
LINC00540-202ENST00000616974 HSPA4P34932 840 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 SLC1A4P43007 532 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PRKCZQ05513 592 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PABPC4Q13310 644 aaKnown RBP eCLIP15.86■□□□□ 0.13
LINC00540-202ENST00000616974 SLC35G1Q2M3R5 365 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PNMA1Q8ND90 353 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 NCOA7Q8NI08 942 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 IGDCC4Q8TDY8 1250 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 MORF4L1Q9UBU8 362 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PPP1R9AQ9ULJ8 1098 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 RIPK3Q9Y572 518 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 VWA5AO00534 786 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 FMNL1O95466 1100 aaPredicted RBP15.86■□□□□ 0.13
LINC00540-202ENST00000616974 BMP3P12645 472 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 RXRAP19793 462 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PLS1Q14651 629 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 CTU1Q7Z7A3 348 aaKnown RBP15.86■□□□□ 0.13
LINC00540-202ENST00000616974 STAG2Q8N3U4 1231 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 CNNM2Q9H8M5 875 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PTCH2Q9Y6C5 1203 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 LCTP09848 1927 aa15.86■□□□□ 0.13
LINC00540-202ENST00000616974 PLXNA1Q9UIW2 1896 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 MYCP01106 439 aaPredicted RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 SLC4A3P48751 1232 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 RALYLQ86SE5 291 aaKnown RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 IQCA1Q86XH1 822 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 UBAC1Q9BSL1 405 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 MOV10L1Q9BXT6 1211 aaKnown RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 UBA5Q9GZZ9 404 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 ZNF214Q9UL59 606 aaPredicted RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 ADAMTS5Q9UNA0 930 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 IFIT3O14879 490 aaKnown RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 PRC1O43663 620 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 GCLCP48506 637 aaPredicted RBP15.85■□□□□ 0.13
LINC00540-202ENST00000616974 TRDNQ13061 729 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 CCDC96Q2M329 555 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 CPXCR1Q8N123 301 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 GPRC5AQ8NFJ5 357 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 ERO1AQ96HE7 468 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 GMCL1Q96IK5 515 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 SLF1Q9BQI6 1058 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 LY9Q9HBG7 655 aa15.85■□□□□ 0.13
LINC00540-202ENST00000616974 SNHG28P0DPA3 235 aa15.84■□□□□ 0.13
LINC00540-202ENST00000616974 NBPF11Q86T75 865 aa15.84■□□□□ 0.13
LINC00540-202ENST00000616974 DGKHQ86XP1 1220 aa15.84■□□□□ 0.13
LINC00540-202ENST00000616974 TNS4Q8IZW8 715 aa15.84■□□□□ 0.13
LINC00540-202ENST00000616974 IFIT1BQ5T764 474 aaKnown RBP15.83■□□□□ 0.13
LINC00540-202ENST00000616974 WDR78Q5VTH9 848 aa15.83■□□□□ 0.13
LINC00540-202ENST00000616974 SH3TC2Q8TF17 1288 aa15.83■□□□□ 0.13
LINC00540-202ENST00000616974 KCNB2Q92953 911 aa15.83■□□□□ 0.13
LINC00540-202ENST00000616974 SPATC1LQ9H0A9 340 aa15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms