RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 BPIFA3Q9BQP9 254 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 ZSWIM6Q9HCJ5 1215 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 ZBTB1Q9Y2K1 713 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 B4DLN1 442 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 AGPSO00116 658 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 MYO1EQ12965 1108 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 BLOC1S2Q6QNY1 142 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 PKD1L3Q7Z443 1732 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 DZIP3Q86Y13 1208 aaKnown RBP11.43□□□□□ -0.58
VPS39-214ENST00000614932 KIAA0825Q8IV33 1275 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 GALNT15Q8N3T1 639 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 C15orf41Q9Y2V0 281 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 ARFGEF2Q9Y6D5 1785 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 PFKFB2O60825 505 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 PIP4K2BP78356 416 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 TCIRG1Q13488 830 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 CCAR1Q8IX12 1150 aaKnown RBP11.43□□□□□ -0.58
VPS39-214ENST00000614932 NUP58Q9BVL2 599 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 KCPQ6ZWJ8 1503 aa11.43□□□□□ -0.58
VPS39-214ENST00000614932 ZNF609O15014 1411 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 GOLGA8KD6RF30 607 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 EYA2O00167 538 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 HIP1O00291 1037 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 MGRN1O60291 552 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 IFIT1P09914 478 aaKnown RBP11.42□□□□□ -0.58
VPS39-214ENST00000614932 KCNQ4P56696 695 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 FANCCQ00597 558 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 CUL3Q13618 768 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 KARSQ15046 597 aaKnown RBP11.42□□□□□ -0.58
VPS39-214ENST00000614932 GNPTABQ3T906 1256 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 NAA35Q5VZE5 725 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 DNAAF2Q9NVR5 837 aaKnown RBP11.42□□□□□ -0.58
VPS39-214ENST00000614932 HAUS2Q9NVX0 235 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 PAG1Q9NWQ8 432 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 A6NHS1 94 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 PDLIM1O00151 329 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 SNAP23O00161 211 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 SCNN1BP51168 640 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 IFT88Q13099 833 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 CCDC121Q6ZUS5 278 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 HELBQ8NG08 1087 aaPredicted RBP11.42□□□□□ -0.58
VPS39-214ENST00000614932 DTNBP1Q96EV8 351 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 HAUS7Q99871 368 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
VPS39-214ENST00000614932 GLI3P10071 1580 aa11.42□□□□□ -0.58
VPS39-214ENST00000614932 CBFA2T2O43439 604 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 STX10O60499 249 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 SMIM24O75264 130 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 ATP6V1G1O75348 118 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 STARD3NLO95772 234 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 MAGEA10P43363 369 aaPredicted RBP11.41□□□□□ -0.58
VPS39-214ENST00000614932 BLMHQ13867 455 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 SCARF1Q14162 830 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 WHAMMP3Q1A5X7 153 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 TOGARAM2Q6ZUX3 1019 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 SMIM5Q71RC9 77 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 CCDC148Q8NFR7 591 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 FBXW7Q969H0 707 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 STAMBPL1Q96FJ0 436 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 CEP126Q9P2H0 1117 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 CYP21A2P08686 494 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 ZNF473Q8WTR7 871 aaKnown RBP11.41□□□□□ -0.58
VPS39-214ENST00000614932 C17orf50Q8WW18 174 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 CUL5Q93034 780 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 TBC1D31Q96DN5 1066 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 TRIM7Q9C029 511 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 GREM2Q9H772 168 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 NOD2Q9HC29 1040 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 MYO1AQ9UBC5 1043 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 NUB1Q9Y5A7 615 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 ATP6V1G2O95670 118 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 TOP1P11387 765 aaKnown RBP11.41□□□□□ -0.58
VPS39-214ENST00000614932 IL15P40933 162 aaPredicted RBP11.41□□□□□ -0.58
VPS39-214ENST00000614932 PDCLQ13371 301 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 CCDC73Q6ZRK6 1079 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 EPN3Q9H201 632 aa11.41□□□□□ -0.58
VPS39-214ENST00000614932 ATP4AP20648 1035 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 HAND2P61296 217 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 GOLGA8FQ08AF8 430 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 GOLGA8DPQ0D2H9 430 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 XRCC4Q13426 336 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 MCMDC2Q4G0Z9 681 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 C6orf89Q6UWU4 347 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 CRELD2Q6UXH1 353 aaPredicted RBP11.4□□□□□ -0.58
VPS39-214ENST00000614932 ISCA1Q9BUE6 129 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 TRMT112Q9UI30 125 aaKnown RBP11.4□□□□□ -0.58
VPS39-214ENST00000614932 MED23Q9ULK4 1368 aa11.4□□□□□ -0.58
VPS39-214ENST00000614932 KIF5CO60282 957 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 JAK2O60674 1132 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 ANP32DO95626 131 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 RPS6KB1P23443 525 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 AKAP17AQ02040 695 aaKnown RBP11.4□□□□□ -0.59
VPS39-214ENST00000614932 DEUP1Q05D60 604 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 TOB2Q14106 344 aaPredicted RBP11.4□□□□□ -0.59
VPS39-214ENST00000614932 WASHC4Q2M389 1173 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 TAX1BP1Q86VP1 789 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 VSTM4Q8IW00 320 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 KBTBD3Q8NAB2 608 aa11.4□□□□□ -0.59
VPS39-214ENST00000614932 NOA1Q8NC60 698 aaKnown RBP11.4□□□□□ -0.59
VPS39-214ENST00000614932 PHACTR1Q9C0D0 580 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms