RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MTUS2Q5JR59 1369 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 PIK3R4Q99570 1358 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 ZFYVE9O95405 1425 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 PTPRUQ92729 1446 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 RIMS2Q9UQ26 1411 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 LAMC1P11047 1609 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 RREB1Q92766 1687 aa6.9□□□□□ -1.31
LINC00540-201ENST00000611481 TSPAN15O95858 294 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 NME2P22392 152 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 CLCN7P51798 805 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 NKPD1Q17RQ9 610 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 ZSCAN18Q8TBC5 510 aaPredicted RBP6.89□□□□□ -1.31
LINC00540-201ENST00000611481 ALKBH8Q96BT7 664 aaKnown RBP6.89□□□□□ -1.31
LINC00540-201ENST00000611481 NOS1P29475 1434 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 RPRD2Q5VT52 1461 aaKnown RBP6.89□□□□□ -1.31
LINC00540-201ENST00000611481 EHBP1L1Q8N3D4 1523 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 DLC1Q96QB1 1528 aa6.89□□□□□ -1.31
LINC00540-201ENST00000611481 PITPNM2Q9BZ72 1349 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.88□□□□□ -1.31
LINC00540-201ENST00000611481 CFPP27918 469 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 XPCQ01831 940 aaPredicted RBP6.88□□□□□ -1.31
LINC00540-201ENST00000611481 ZNF252P-AS1Q0IIN9 211 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 PPM1JQ5JR12 505 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 FYB2Q5VWT5 728 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 DNAJC5GQ8N7S2 189 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 BCO2Q9BYV7 579 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 PDGFDQ9GZP0 370 aaPredicted RBP6.88□□□□□ -1.31
LINC00540-201ENST00000611481 CBX8Q9HC52 389 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 PICK1Q9NRD5 415 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 AKAP2Q9Y2D5 859 aa6.88□□□□□ -1.31
LINC00540-201ENST00000611481 EIF2AK4Q9P2K8 1649 aaKnown RBP6.87□□□□□ -1.31
LINC00540-201ENST00000611481 ATP10DQ9P241 1426 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 GLI1P08151 1106 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 TSPY4P0CV99 314 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 TSPY10P0CW01 314 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 CYFIP1Q7L576 1253 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 CACNA2D2Q9NY47 1150 aa6.87□□□□□ -1.31
LINC00540-201ENST00000611481 CASKIN1Q8WXD9 1431 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 FANCGO15287 622 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 NTF4P34130 210 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 MPZL3Q6UWV2 235 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 FAM196AQ6ZSG2 479 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 SYDE1Q6ZW31 735 aaPredicted RBP6.86□□□□□ -1.31
LINC00540-201ENST00000611481 CDC37L1Q7L3B6 337 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 LRRC56Q8IYG6 542 aaPredicted RBP6.86□□□□□ -1.31
LINC00540-201ENST00000611481 ZNF526Q8TF50 670 aaPredicted RBP6.86□□□□□ -1.31
LINC00540-201ENST00000611481 KIRREL1Q96J84 757 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 RBCK1Q9BYM8 510 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 FOXQ1Q9C009 403 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 PRDM5Q9NQX1 630 aaPredicted RBP6.86□□□□□ -1.31
LINC00540-201ENST00000611481 CSADQ9Y600 493 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 TMEM131LA2VDJ0 1609 aa6.86□□□□□ -1.31
LINC00540-201ENST00000611481 KRTAP9-7A8MTY7 169 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 EOMESO95936 686 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 TMEM67Q5HYA8 995 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 PI16Q6UXB8 463 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 PRR23BQ6ZRT6 265 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 C1QL4Q86Z23 238 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 SIAH1Q8IUQ4 282 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 KCT2Q8NC54 265 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 MAPK8IP1Q9UQF2 711 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 SAMM50Q9Y512 469 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 USP32Q8NFA0 1604 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 MYO5BQ9ULV0 1848 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 CASZ1Q86V15 1759 aa6.85□□□□□ -1.31
LINC00540-201ENST00000611481 NALCNQ8IZF0 1738 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 PLCH1Q4KWH8 1693 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 NPHP3Q7Z494 1330 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 DCDC2CA8MYV0 355 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 ZNF865P0CJ78 1059 aaPredicted RBP6.84□□□□□ -1.31
LINC00540-201ENST00000611481 RING1Q06587 406 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 ZBTB37Q5TC79 503 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.84□□□□□ -1.31
LINC00540-201ENST00000611481 KRTAP4-11Q9BYQ6 195 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 CARS2Q9HA77 564 aaKnown RBP6.84□□□□□ -1.31
LINC00540-201ENST00000611481 SLC52A1Q9NWF4 448 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 PXDNQ92626 1479 aa6.84□□□□□ -1.31
LINC00540-201ENST00000611481 XRN1Q8IZH2 1706 aaKnown RBP6.84□□□□□ -1.31
LINC00540-201ENST00000611481 FAM155AB1AL88 458 aaPredicted RBP6.83□□□□□ -1.32
LINC00540-201ENST00000611481 NXPE4Q6UWF7 544 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 MPRIPQ6WCQ1 1025 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 LCNL1Q6ZST4 164 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 UBE3DQ7Z6J8 389 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 C12orf40Q86WS4 652 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 NECAB3Q96P71 396 aaPredicted RBP6.83□□□□□ -1.32
LINC00540-201ENST00000611481 NWD2Q9ULI1 1742 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 PTPN23Q9H3S7 1636 aa6.83□□□□□ -1.32
LINC00540-201ENST00000611481 ADGRL2O95490 1459 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 FYCO1Q9BQS8 1478 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 NFIBO00712 420 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 LRIG2O94898 1065 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 ZSCAN22P10073 491 aaPredicted RBP6.82□□□□□ -1.32
LINC00540-201ENST00000611481 GDNFP39905 211 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 LILRA6Q6PI73 481 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 ARMCX6Q7L4S7 300 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 NPAS4Q8IUM7 802 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 GRIN3AQ8TCU5 1115 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 HSPA12BQ96MM6 686 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 CEP44Q9C0F1 390 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 ATP13A1Q9HD20 1204 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms