RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PAGR1Q9BTK6 254 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 MCOLN1Q9GZU1 580 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 CNNM2Q9H8M5 875 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 ADAMTS5Q9UNA0 930 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 TRIM17Q9Y577 477 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 MYH8P13535 1937 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 TNKSO95271 1327 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 LAMA4Q16363 1823 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 BMP3P12645 472 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 TTBK2Q6IQ55 1244 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 KCTD1Q719H9 257 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 REPS2Q8NFH8 660 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 GMCL1Q96IK5 515 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 PORCNQ9H237 461 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 EFCC1Q9HA90 598 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 HOXC10Q9NYD6 342 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 RABGAP1Q9Y3P9 1069 aa16.73■□□□□ 0.27
SHKBP1-217ENST00000598558 SEC24BO95487 1268 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 ERVK-9P63128 1117 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 ERVK-24P63145 666 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 TSGA10IPQ3SY00 556 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 GPRC5AQ8NFJ5 357 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 NCOA7Q8NI08 942 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 IGDCC4Q8TDY8 1250 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 USP26Q9BXU7 913 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 PPP1R9AQ9ULJ8 1098 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 GABRQQ9UN88 632 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 ZSWIM8A7E2V4 1837 aa16.72■□□□□ 0.27
SHKBP1-217ENST00000598558 TMEM232C9JQI7 657 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 HSPA4P34932 840 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 NT5C2P49902 561 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 TRDNQ13061 729 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 TMEM132BQ14DG7 1078 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 PPP4R3BQ5MIZ7 849 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 IQCA1Q86XH1 822 aa16.71■□□□□ 0.27
SHKBP1-217ENST00000598558 RLFQ13129 1914 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 VWA5AO00534 786 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 FMNL1O95466 1100 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 SNHG28P0DPA3 235 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 PDHBP11177 359 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 SLC1A4P43007 532 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 SNAP25P60880 206 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 RALYLQ86SE5 291 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 SLF1Q9BQI6 1058 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 GPCPD1Q9NPB8 672 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 GJD2Q9UKL4 321 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 PTPN22Q9Y2R2 807 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 SNX14Q9Y5W7 946 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 FRMPD2Q68DX3 1309 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 MYPNQ86TC9 1320 aa16.7■□□□□ 0.26
SHKBP1-217ENST00000598558 IFIT3O14879 490 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 PRC1O43663 620 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 CPA1P15085 419 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 SLC16A2P36021 539 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 EXOSC10Q01780 885 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 PRKCZQ05513 592 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 KIF22Q14807 665 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 CCDC178Q5BJE1 867 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 TNS4Q8IZW8 715 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 PNMA1Q8ND90 353 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 GTF3C2Q8WUA4 911 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 DCAF4Q8WV16 495 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 KIFC2Q96AC6 838 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 UBAC1Q9BSL1 405 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 MOV10L1Q9BXT6 1211 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 LRRC2Q9BYS8 371 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 CPVLQ9H3G5 476 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 SRRDQ9UH36 339 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 FEM1BQ9UK73 627 aa16.69■□□□□ 0.26
SHKBP1-217ENST00000598558 REC8O95072 547 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 GOLGA8HP0CJ92 632 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 FCGRTP55899 365 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 ZNF543Q08ER8 600 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 PRPF38AQ8NAV1 312 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 TCEANC2Q96MN5 208 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 NEK1Q96PY6 1258 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 SPATC1LQ9H0A9 340 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 KAT14Q9H8E8 782 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 LY9Q9HBG7 655 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 ZNF214Q9UL59 606 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 PTCH2Q9Y6C5 1203 aa16.68■□□□□ 0.26
SHKBP1-217ENST00000598558 PLA2G6O60733 806 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 CCDC96Q2M329 555 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 C8orf34Q49A92 452 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 TMEM67Q5HYA8 995 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 IFIT1BQ5T764 474 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 RNF20Q5VTR2 975 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 FBXO46Q6PJ61 603 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 BTNL9Q6UXG8 535 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 SLC38A10Q9HBR0 1119 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 PRR12Q9ULL5 1215 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 ISY1Q9ULR0 285 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 RIPK3Q9Y572 518 aa16.67■□□□□ 0.26
SHKBP1-217ENST00000598558 SH2B2O14492 632 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 TNPO2O14787 897 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 TAL1P17542 331 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 MCM5P33992 734 aa16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 FLT3LGP49771 235 aa16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 PLS1Q14651 629 aa16.66■□□□□ 0.26
SHKBP1-217ENST00000598558 WTAPQ15007 396 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms