RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 USP17L17D6RBQ6 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L19D6RCP7 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L20D6RJB6 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 WDR46O15213 610 aaKnown RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 FOXN1O15353 648 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 BCRP11274 1271 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 CASTP20810 708 aaKnown RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 CTGFP29279 349 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 DSG3P32926 999 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 MAP2K1Q02750 393 aaPredicted RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L24Q0WX57 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 Q3C1V9 767 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 CCDC178Q5BJE1 867 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 BTNL9Q6UXG8 535 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 RUFY3Q7L099 469 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 STAG2Q8N3U4 1231 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 PNMA1Q8ND90 353 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 CHMP4CQ96CF2 233 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 FEZ1Q99689 392 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 C22orf23Q9BZE7 217 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 UPF3BQ9BZI7 483 aaKnown RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 ALDH8A1Q9H2A2 487 aaPredicted RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 FAM217BQ9NTX9 383 aaPredicted RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 SAGE1Q9NXZ1 904 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 TMOD4Q9NZQ9 345 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 MYH4Q9Y623 1939 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 PALM3A6NDB9 673 aaPredicted RBP12.41□□□□□ -0.42
LIG1-210ENST00000596332 TLR2O60603 784 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 PLA2G6O60733 806 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 ZNF543Q08ER8 600 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 IFIT1BQ5T764 474 aaKnown RBP12.41□□□□□ -0.42
LIG1-210ENST00000596332 KCTD1Q719H9 257 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 NBPF11Q86T75 865 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 TBC1D32Q96NH3 1257 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 UBAC1Q9BSL1 405 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 CPVLQ9H3G5 476 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 SH2D4AQ9H788 454 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 GOPCQ9HD26 462 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 BTBD7Q9P203 1132 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 MAD2L2Q9UI95 211 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 TSKSQ9UJT2 592 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 HPS5Q9UPZ3 1129 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 PARP14Q460N5 1801 aa12.41□□□□□ -0.42
LIG1-210ENST00000596332 ALDH1A1P00352 501 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 HMGB1P09429 215 aaKnown RBP12.4□□□□□ -0.42
LIG1-210ENST00000596332 GOLGA8HP0CJ92 632 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 HSPA1AP0DMV8 641 aaKnown RBP12.4□□□□□ -0.42
LIG1-210ENST00000596332 HSPA1BP0DMV9 641 aaKnown RBP12.4□□□□□ -0.42
LIG1-210ENST00000596332 BMP3P12645 472 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 HERVK_113P62684 666 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 COG2Q14746 738 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 WTAPQ15007 396 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 TAF1CQ15572 869 aaPredicted RBP12.4□□□□□ -0.42
LIG1-210ENST00000596332 NOM1Q5C9Z4 860 aaKnown RBP12.4□□□□□ -0.42
LIG1-210ENST00000596332 PPP4R3BQ5MIZ7 849 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 BLOC1S2Q6QNY1 142 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 Q6ZUG5 572 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 DCAF4Q8WV16 495 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 ATG4CQ96DT6 458 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 MYL10Q9BUA6 226 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 MORF4L1Q9UBU8 362 aa12.4□□□□□ -0.42
LIG1-210ENST00000596332 ZNF536O15090 1300 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 TMEM232C9JQI7 657 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 CYTH3O43739 400 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 HSPA8P11142 646 aaKnown RBP12.39□□□□□ -0.43
LIG1-210ENST00000596332 PSMA5P28066 241 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 FUT2Q10981 343 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 GRM4Q14833 912 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 ZNF654Q8IZM8 581 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 LARP6Q9BRS8 491 aaKnown RBP12.39□□□□□ -0.43
LIG1-210ENST00000596332 KAT14Q9H8E8 782 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 CPA4Q9UI42 421 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 PPP1R9AQ9ULJ8 1098 aa12.39□□□□□ -0.43
LIG1-210ENST00000596332 FRMPD2Q68DX3 1309 aaPredicted RBP12.38□□□□□ -0.43
LIG1-210ENST00000596332 MYPNQ86TC9 1320 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 A0A0G2JMZ2 1700 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 GPR25O00155 361 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 VWA5AO00534 786 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 RXRAP19793 462 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 SLC16A2P36021 539 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 SLC1A4P43007 532 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 APOBRQ0VD83 1088 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 TMEM132BQ14DG7 1078 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 OTUD7BQ6GQQ9 843 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 APOA5Q6Q788 366 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 RAB11FIP4Q86YS3 637 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 TMTC2Q8N394 836 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 BRF1Q92994 677 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 MTMR8Q96EF0 704 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 MAP3K14Q99558 947 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 UBA5Q9GZZ9 404 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 ZFYVE28Q9HCC9 887 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 GPCPD1Q9NPB8 672 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 HOXC10Q9NYD6 342 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 ZNF214Q9UL59 606 aaPredicted RBP12.38□□□□□ -0.43
LIG1-210ENST00000596332 PRR12Q9ULL5 1215 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 MTMR7Q9Y216 660 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 CYP46A1Q9Y6A2 500 aa12.38□□□□□ -0.43
LIG1-210ENST00000596332 EIF5BO60841 1220 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms