RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GREB1LQ9C091 1923 aaPredicted RBP19.24■□□□□ 0.67
CLN3-229ENST00000567963 MINDY4BA8MYZ0 360 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 GPAA1O43292 621 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 CYBAP13498 195 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 SYN1P17600 705 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 GNAT2P19087 354 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 STK11IPQ8N1F8 1099 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 FBXO28Q9NVF7 368 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 SLC5A4Q9NY91 659 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 COL11A1P12107 1806 aaPredicted RBP19.24■□□□□ 0.67
CLN3-229ENST00000567963 ROBO3Q96MS0 1386 aa19.24■□□□□ 0.67
CLN3-229ENST00000567963 M0R2C6 588 aa19.23■□□□□ 0.67
CLN3-229ENST00000567963 SLC25A27O95847 323 aa19.23■□□□□ 0.67
CLN3-229ENST00000567963 LRRC26Q2I0M4 334 aa19.23■□□□□ 0.67
CLN3-229ENST00000567963 LRRFIP1Q32MZ4 808 aaKnown RBP19.23■□□□□ 0.67
CLN3-229ENST00000567963 PI4K2BQ8TCG2 481 aa19.23■□□□□ 0.67
CLN3-229ENST00000567963 EPB41L4AQ9HCS5 686 aaPredicted RBP19.23■□□□□ 0.67
CLN3-229ENST00000567963 ZNFX1Q9P2E3 1918 aaKnown RBP19.23■□□□□ 0.67
CLN3-229ENST00000567963 PATL2C9JE40 543 aaKnown RBP19.22■□□□□ 0.67
CLN3-229ENST00000567963 VWA5AO00534 786 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 ERC2O15083 957 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 RAD21O60216 631 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 FCER1AP12319 257 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 FAM83BQ5T0W9 1011 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 NYAP2Q9P242 653 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 PPP1R9AQ9ULJ8 1098 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 APPP05067 770 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 TDO2P48775 406 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 RIOX2Q8IUF8 465 aa19.22■□□□□ 0.67
CLN3-229ENST00000567963 OTUD7AQ8TE49 926 aaPredicted RBP19.22■□□□□ 0.67
CLN3-229ENST00000567963 SENP6Q9GZR1 1112 aaPredicted RBP19.22■□□□□ 0.67
CLN3-229ENST00000567963 STAT3P40763 770 aa19.21■□□□□ 0.67
CLN3-229ENST00000567963 MAGEA10P43363 369 aaPredicted RBP19.21■□□□□ 0.67
CLN3-229ENST00000567963 IFNL3Q8IZI9 196 aa19.21■□□□□ 0.67
CLN3-229ENST00000567963 MAML3Q96JK9 1138 aa19.21■□□□□ 0.67
CLN3-229ENST00000567963 SEC62Q99442 399 aaKnown RBP19.21■□□□□ 0.67
CLN3-229ENST00000567963 ZNF287Q9HBT7 754 aa19.21■□□□□ 0.67
CLN3-229ENST00000567963 F5H6K3 240 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 DNM1LO00429 736 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 SOX1O00570 391 aaPredicted RBP19.2■□□□□ 0.66
CLN3-229ENST00000567963 SEPT4O43236 478 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 RRP1P56182 461 aaKnown RBP19.2■□□□□ 0.66
CLN3-229ENST00000567963 KLRC3Q07444 240 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 PRAMEF19Q5SWL8 479 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 ZNF444Q8N0Y2 327 aaPredicted RBP19.2■□□□□ 0.66
CLN3-229ENST00000567963 REPS2Q8NFH8 660 aa19.2■□□□□ 0.66
CLN3-229ENST00000567963 ZNF214Q9UL59 606 aaPredicted RBP19.2■□□□□ 0.66
CLN3-229ENST00000567963 IGKV6D-41A0A0C4DH26 115 aa19.19■□□□□ 0.66
CLN3-229ENST00000567963 MMP19Q99542 508 aa19.19■□□□□ 0.66
CLN3-229ENST00000567963 NUP88Q99567 741 aaPredicted RBP19.19■□□□□ 0.66
CLN3-229ENST00000567963 CLIP2Q9UDT6 1046 aa19.19■□□□□ 0.66
CLN3-229ENST00000567963 PRDM1O75626 825 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 MX1P20591 662 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 ZMYM1Q5SVZ6 1142 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 GJC2Q5T442 439 aaPredicted RBP19.18■□□□□ 0.66
CLN3-229ENST00000567963 ANO1Q5XXA6 986 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 ARRDC4Q8NCT1 418 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 MKL1Q969V6 931 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 SLF1Q9BQI6 1058 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 FSD1Q9BTV5 496 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 NACAP1Q9BZK3 213 aa19.18■□□□□ 0.66
CLN3-229ENST00000567963 MYH4Q9Y623 1939 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 NDUFB10O96000 172 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 PGK2P07205 417 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 COPB2P35606 906 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 KCTD2Q14681 263 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 PRPF38AQ8NAV1 312 aaKnown RBP19.17■□□□□ 0.66
CLN3-229ENST00000567963 CEP95Q96GE4 821 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 LRCH3Q96II8 777 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 MTMR4Q9NYA4 1195 aa19.17■□□□□ 0.66
CLN3-229ENST00000567963 DIS3Q9Y2L1 958 aaKnown RBP19.17■□□□□ 0.66
CLN3-229ENST00000567963 SALL3Q9BXA9 1300 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 ATN1P54259 1190 aaPredicted RBP19.16■□□□□ 0.66
CLN3-229ENST00000567963 ZNF792Q3KQV3 632 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 PLXNA1Q9UIW2 1896 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 TTLL1O95922 423 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 PDE4BQ07343 736 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 TDHQ8IZJ6 230 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 TINF2Q9BSI4 451 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 TEX13BQ9BXU2 312 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 UBE2OQ9C0C9 1292 aaKnown RBP19.16■□□□□ 0.66
CLN3-229ENST00000567963 NAPBQ9H115 298 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 NRBP1Q9UHY1 535 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 SYNPO2Q9UMS6 1093 aa19.16■□□□□ 0.66
CLN3-229ENST00000567963 SMCHD1A6NHR9 2005 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 KBTBD13C9JR72 458 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 PPARAQ07869 468 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 ANKRD45Q5TZF3 282 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 SNRNP48Q6IEG0 339 aaKnown RBP19.15■□□□□ 0.66
CLN3-229ENST00000567963 NEDD1Q8NHV4 660 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 CRBNQ96SW2 442 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 RIPK3Q9Y572 518 aa19.15■□□□□ 0.66
CLN3-229ENST00000567963 ATP2A1O14983 1001 aa19.14■□□□□ 0.65
CLN3-229ENST00000567963 SLC3A2P08195 630 aaKnown RBP19.14■□□□□ 0.65
CLN3-229ENST00000567963 TSPY3P0CV98 308 aa19.14■□□□□ 0.65
CLN3-229ENST00000567963 TSPY8P0CW00 308 aa19.14■□□□□ 0.65
CLN3-229ENST00000567963 MDM2Q00987 491 aaPredicted RBP19.14■□□□□ 0.65
CLN3-229ENST00000567963 LRIT3Q3SXY7 679 aa19.14■□□□□ 0.65
CLN3-229ENST00000567963 SLC39A5Q6ZMH5 540 aa19.14■□□□□ 0.65
CLN3-229ENST00000567963 GMCL1P1Q8NEA9 526 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms