RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 SPDYE16A6NNV3 312 aaPredicted RBP12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 EEF2P13639 858 aaKnown RBP12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 MAPK4P31152 587 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 CCNA1P78396 465 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 TRIM32Q13049 653 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 Q3C1V9 767 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 KIAA1755Q5JYT7 1200 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 ZMYM1Q5SVZ6 1142 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 GPR142Q7Z601 462 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 PLEKHH3Q7Z736 793 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 IFNL3Q8IZI9 196 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 CCDC17Q96LX7 622 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 DEFB118Q96PH6 123 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 NUDT12Q9BQG2 462 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 SLC24A3Q9HC58 644 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 IVNS1ABPQ9Y6Y0 642 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 LAMA4Q16363 1823 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 SALL3Q9BXA9 1300 aa12.06□□□□□ -0.48
GTF3C1-206ENST00000566779 CEP290O15078 2479 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 ROBO3Q96MS0 1386 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 ZMYND10O75800 440 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 CNMDO75829 334 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 IGHDP01880 384 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 HMGCRP04035 888 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 ZKSCAN1P17029 563 aaPredicted RBP12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 RASA1P20936 1047 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 SLC4A3P48751 1232 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 IRF5Q13568 498 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 FAM83BQ5T0W9 1011 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 SOCS4Q8WXH5 440 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 TRIB2Q92519 343 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 EVI5LQ96CN4 794 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 SHISA4Q96DD7 197 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 ATG4CQ96DT6 458 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 VCPKMTQ9H867 229 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 GOPCQ9HD26 462 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 TOMM22Q9NS69 142 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 BTBD7Q9P203 1132 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 CENPFP49454 3210 aa12.05□□□□□ -0.48
GTF3C1-206ENST00000566779 PATL2C9JE40 543 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 GALR2O43603 387 aaPredicted RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 FARP2O94887 1054 aaPredicted RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 TFRCP02786 760 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 SLC3A2P08195 630 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 RGS2P41220 211 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 CTDSPL2Q05D32 466 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 SBK1Q52WX2 424 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 FAM47AQ5JRC9 791 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 PRPF38BQ5VTL8 546 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 POTEEQ6S8J3 1075 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 CHD1LQ86WJ1 897 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 ZNF444Q8N0Y2 327 aaPredicted RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 LRRC47Q8N1G4 583 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 NKX2-3Q8TAU0 364 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 PXYLP1Q8TE99 480 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 U2AF1L4Q8WU68 220 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 FAM227BQ96M60 508 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 NUP88Q99567 741 aaPredicted RBP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 KANSL2Q9H9L4 492 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 MTMR7Q9Y216 660 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 RABGAP1Q9Y3P9 1069 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 MCM3APO60318 1980 aa12.04□□□□□ -0.48
GTF3C1-206ENST00000566779 ZNF236Q9UL36 1845 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 A0A0D9SFI3 127 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 WDR46O15213 610 aaKnown RBP12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 GJB1P08034 283 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 TSPY3P0CV98 308 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 TSPY8P0CW00 308 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 PPARAQ07869 468 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 NMIQ13287 307 aaPredicted RBP12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 AAMPQ13685 434 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 COG2Q14746 738 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 CCL14Q16627 93 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 RRP12Q5JTH9 1297 aaKnown RBP12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 VPS53Q5VIR6 699 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 GIMAP6Q6P9H5 292 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 NCAPG2Q86XI2 1143 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 SMC5Q8IY18 1101 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 LPAR1Q92633 364 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 APBA2Q99767 749 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 ZNF287Q9HBT7 754 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 FBXO28Q9NVF7 368 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 STAP2Q9UGK3 403 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 TMX2Q9Y320 296 aa12.03□□□□□ -0.48
GTF3C1-206ENST00000566779 GJA8P48165 433 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 PDE4BQ07343 736 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 SIAH1Q8IUQ4 282 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 DPF3Q92784 378 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 DIAPH3Q9NSV4 1193 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 CLIP2Q9UDT6 1046 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 GJD2Q9UKL4 321 aa12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 CTDP1Q9Y5B0 961 aaPredicted RBP12.02□□□□□ -0.49
GTF3C1-206ENST00000566779 MYH6P13533 1939 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 TSPY2A6NKD2 308 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 SGPL1O95470 568 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 ERCC3P19447 782 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 CNGA1P29973 690 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 HAND2P61296 217 aa12.01□□□□□ -0.49
GTF3C1-206ENST00000566779 TFAP4Q01664 338 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms