RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ADORA2AP29274 412 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 CTDSPL2Q05D32 466 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 REPS2Q8NFH8 660 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 CHMP4CQ96CF2 233 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 GCC1Q96CN9 775 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 FAM227BQ96M60 508 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 CLIP2Q9UDT6 1046 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 ADAMTS5Q9UNA0 930 aa21.19■□□□□ 0.98
HDDC3-205ENST00000559898 GNAT2P19087 354 aa21.18■□□□□ 0.98
HDDC3-205ENST00000559898 CHRDL2Q6WN34 429 aa21.18■□□□□ 0.98
HDDC3-205ENST00000559898 CEP95Q96GE4 821 aa21.18■□□□□ 0.98
HDDC3-205ENST00000559898 SH2D4AQ9H788 454 aa21.18■□□□□ 0.98
HDDC3-205ENST00000559898 A0A0D9SFI3 127 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 NDUFB10O96000 172 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 HOXC6P09630 235 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 PPARAQ07869 468 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 RASGRP2Q7LDG7 609 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 NCAPG2Q86XI2 1143 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 LRRC47Q8N1G4 583 aaKnown RBP21.17■□□□□ 0.98
HDDC3-205ENST00000559898 HTATIP2Q9BUP3 242 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 NYAP2Q9P242 653 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 IVNS1ABPQ9Y6Y0 642 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 PFASO15067 1338 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 PLXNA1Q9UIW2 1896 aa21.17■□□□□ 0.98
HDDC3-205ENST00000559898 F5H6K3 240 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 KLRC3Q07444 240 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 PRAMEF19Q5SWL8 479 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 SMC5Q8IY18 1101 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 NAPBQ9H115 298 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 GOPCQ9HD26 462 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 PPP1R9AQ9ULJ8 1098 aa21.16■□□□□ 0.98
HDDC3-205ENST00000559898 VWA5AO00534 786 aa21.15■□□□□ 0.98
HDDC3-205ENST00000559898 NECAB2Q7Z6G3 386 aa21.15■□□□□ 0.98
HDDC3-205ENST00000559898 TRMT44Q8IYL2 757 aaKnown RBP21.15■□□□□ 0.98
HDDC3-205ENST00000559898 SHCBP1Q8NEM2 672 aa21.15■□□□□ 0.98
HDDC3-205ENST00000559898 EVI5LQ96CN4 794 aa21.15■□□□□ 0.98
HDDC3-205ENST00000559898 MTMR4Q9NYA4 1195 aa21.15■□□□□ 0.98
HDDC3-205ENST00000559898 RBM27Q9P2N5 1060 aaKnown RBP21.15■□□□□ 0.98
HDDC3-205ENST00000559898 ZNF214Q9UL59 606 aaPredicted RBP21.15■□□□□ 0.98
HDDC3-205ENST00000559898 NMT2O60551 498 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 PGK2P07205 417 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 ANO1Q5XXA6 986 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 DPP9Q86TI2 863 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 ZNF589Q86UQ0 364 aaPredicted RBP21.14■□□□□ 0.97
HDDC3-205ENST00000559898 ZNF444Q8N0Y2 327 aaPredicted RBP21.14■□□□□ 0.97
HDDC3-205ENST00000559898 MB21D1Q8N884 522 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.14■□□□□ 0.97
HDDC3-205ENST00000559898 RIPK3Q9Y572 518 aa21.14■□□□□ 0.97
HDDC3-205ENST00000559898 SUPT16HQ9Y5B9 1047 aaKnown RBP21.14■□□□□ 0.97
HDDC3-205ENST00000559898 EVI5O60447 810 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 CYBAP13498 195 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 FXR1P51114 621 aaKnown RBP eCLIP21.13■□□□□ 0.97
HDDC3-205ENST00000559898 IRX6P78412 446 aaPredicted RBP21.13■□□□□ 0.97
HDDC3-205ENST00000559898 TFAP4Q01664 338 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 NMIQ13287 307 aaPredicted RBP21.13■□□□□ 0.97
HDDC3-205ENST00000559898 PLEKHM2Q8IWE5 1019 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 C7orf61Q8IZ16 206 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 ANKLE1Q8NAG6 615 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 NEDD1Q8NHV4 660 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 NBPF3Q9H094 633 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 PRO3102Q9H379 93 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 C11orf49Q9H6J7 331 aa21.13■□□□□ 0.97
HDDC3-205ENST00000559898 ZBTB47Q9UFB7 747 aaPredicted RBP21.13■□□□□ 0.97
HDDC3-205ENST00000559898 CNGA1P29973 690 aa21.12■□□□□ 0.97
HDDC3-205ENST00000559898 LRRFIP1Q32MZ4 808 aaKnown RBP21.12■□□□□ 0.97
HDDC3-205ENST00000559898 MFSD14CQ5VZR4 134 aa21.12■□□□□ 0.97
HDDC3-205ENST00000559898 NACAP1Q9BZK3 213 aa21.12■□□□□ 0.97
HDDC3-205ENST00000559898 IL17RBQ9NRM6 502 aa21.12■□□□□ 0.97
HDDC3-205ENST00000559898 ZMYND8Q9ULU4 1186 aaPredicted RBP21.12■□□□□ 0.97
HDDC3-205ENST00000559898 SMCHD1A6NHR9 2005 aa21.12■□□□□ 0.97
HDDC3-205ENST00000559898 RANBP2P49792 3224 aaKnown RBP21.12■□□□□ 0.97
HDDC3-205ENST00000559898 PLIN4Q96Q06 1357 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 DNAH12Q6ZR08 3092 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 COL6A1P12109 1028 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 STAT3P40763 770 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 RIOX2Q8IUF8 465 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 MKL1Q969V6 931 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 MAML3Q96JK9 1138 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 SLF1Q9BQI6 1058 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 MROH8Q9H579 483 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 TRIOBPQ9H2D6 2365 aa21.11■□□□□ 0.97
HDDC3-205ENST00000559898 STRNO43815 780 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 TSPY3P0CV98 308 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 TSPY8P0CW00 308 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 SYN1P17600 705 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 SLC4A3P48751 1232 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 NUCB1Q02818 461 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 LRRC26Q2I0M4 334 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 CHD1LQ86WJ1 897 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 RILPL2Q969X0 211 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 RWDD1Q9H446 243 aaPredicted RBP21.1■□□□□ 0.97
HDDC3-205ENST00000559898 HELLSQ9NRZ9 838 aa21.1■□□□□ 0.97
HDDC3-205ENST00000559898 DDX20Q9UHI6 824 aaKnown RBP21.1■□□□□ 0.97
HDDC3-205ENST00000559898 TRIM6-TRIM34B2RNG4 842 aa21.09■□□□□ 0.97
HDDC3-205ENST00000559898 TTLL1O95922 423 aa21.09■□□□□ 0.97
HDDC3-205ENST00000559898 TAL1P17542 331 aaPredicted RBP21.09■□□□□ 0.97
HDDC3-205ENST00000559898 PDE4BQ07343 736 aa21.09■□□□□ 0.97
HDDC3-205ENST00000559898 OLFML2BQ68BL8 750 aa21.09■□□□□ 0.97
HDDC3-205ENST00000559898 KIFC2Q96AC6 838 aa21.09■□□□□ 0.97
HDDC3-205ENST00000559898 MMP19Q99542 508 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms